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A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics.

Publication ,  Journal Article
Xu, J; Dimitrov, L; Chang, B-L; Adams, TS; Turner, AR; Meyers, DA; Eeles, RA; Easton, DF; Foulkes, WD; Simard, J; Giles, GG; Hopper, JL ...
Published in: Am J Hum Genet
August 2005

Evidence of the existence of major prostate cancer (PC)-susceptibility genes has been provided by multiple segregation analyses. Although genomewide screens have been performed in over a dozen independent studies, few chromosomal regions have been consistently identified as regions of interest. One of the major difficulties is genetic heterogeneity, possibly due to multiple, incompletely penetrant PC-susceptibility genes. In this study, we explored two approaches to overcome this difficulty, in an analysis of a large number of families with PC in the International Consortium for Prostate Cancer Genetics (ICPCG). One approach was to combine linkage data from a total of 1,233 families to increase the statistical power for detecting linkage. Using parametric (dominant and recessive) and nonparametric analyses, we identified five regions with "suggestive" linkage (LOD score >1.86): 5q12, 8p21, 15q11, 17q21, and 22q12. The second approach was to focus on subsets of families that are more likely to segregate highly penetrant mutations, including families with large numbers of affected individuals or early age at diagnosis. Stronger evidence of linkage in several regions was identified, including a "significant" linkage at 22q12, with a LOD score of 3.57, and five suggestive linkages (1q25, 8q13, 13q14, 16p13, and 17q21) in 269 families with at least five affected members. In addition, four additional suggestive linkages (3p24, 5q35, 11q22, and Xq12) were found in 606 families with mean age at diagnosis of < or = 65 years. Although it is difficult to determine the true statistical significance of these findings, a conservative interpretation of these results would be that if major PC-susceptibility genes do exist, they are most likely located in the regions generating suggestive or significant linkage signals in this large study.

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Published In

Am J Hum Genet

DOI

ISSN

0002-9297

Publication Date

August 2005

Volume

77

Issue

2

Start / End Page

219 / 229

Location

United States

Related Subject Headings

  • Prostatic Neoplasms
  • Pedigree
  • Middle Aged
  • Male
  • Lod Score
  • International Cooperation
  • Humans
  • Genotype
  • Genome, Human
  • Genetics & Heredity
 

Citation

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Xu, J., Dimitrov, L., Chang, B.-L., Adams, T. S., Turner, A. R., Meyers, D. A., … ACTANE Consortium, . (2005). A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics. Am J Hum Genet, 77(2), 219–229. https://doi.org/10.1086/432377
Xu, Jianfeng, Latchezar Dimitrov, Bao-Li Chang, Tamara S. Adams, Aubrey R. Turner, Deborah A. Meyers, Rosalind A. Eeles, et al. “A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics.Am J Hum Genet 77, no. 2 (August 2005): 219–29. https://doi.org/10.1086/432377.
Xu, Jianfeng, et al. “A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics.Am J Hum Genet, vol. 77, no. 2, Aug. 2005, pp. 219–29. Pubmed, doi:10.1086/432377.
Xu J, Dimitrov L, Chang B-L, Adams TS, Turner AR, Meyers DA, Eeles RA, Easton DF, Foulkes WD, Simard J, Giles GG, Hopper JL, Mahle L, Moller P, Bishop T, Evans C, Edwards S, Meitz J, Bullock S, Hope Q, Hsieh C-L, Halpern J, Balise RN, Oakley-Girvan I, Whittemore AS, Ewing CM, Gielzak M, Isaacs SD, Walsh PC, Wiley KE, Isaacs WB, Thibodeau SN, McDonnell SK, Cunningham JM, Zarfas KE, Hebbring S, Schaid DJ, Friedrichsen DM, Deutsch K, Kolb S, Badzioch M, Jarvik GP, Janer M, Hood L, Ostrander EA, Stanford JL, Lange EM, Beebe-Dimmer JL, Mohai CE, Cooney KA, Ikonen T, Baffoe-Bonnie A, Fredriksson H, Matikainen MP, Tammela TL, Bailey-Wilson J, Schleutker J, Maier C, Herkommer K, Hoegel JJ, Vogel W, Paiss T, Wiklund F, Emanuelsson M, Stenman E, Jonsson B-A, Gronberg H, Camp NJ, Farnham J, Cannon-Albright LA, Seminara D, ACTANE Consortium. A combined genomewide linkage scan of 1,233 families for prostate cancer-susceptibility genes conducted by the international consortium for prostate cancer genetics. Am J Hum Genet. 2005 Aug;77(2):219–229.
Journal cover image

Published In

Am J Hum Genet

DOI

ISSN

0002-9297

Publication Date

August 2005

Volume

77

Issue

2

Start / End Page

219 / 229

Location

United States

Related Subject Headings

  • Prostatic Neoplasms
  • Pedigree
  • Middle Aged
  • Male
  • Lod Score
  • International Cooperation
  • Humans
  • Genotype
  • Genome, Human
  • Genetics & Heredity