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Outlier detection for multi-network data.

Publication ,  Journal Article
Dey, P; Zhang, Z; Dunson, DB
Published in: Bioinformatics (Oxford, England)
August 2022

It has become routine in neuroscience studies to measure brain networks for different individuals using neuroimaging. These networks are typically expressed as adjacency matrices, with each cell containing a summary of connectivity between a pair of brain regions. There is an emerging statistical literature describing methods for the analysis of such multi-network data in which nodes are common across networks but the edges vary. However, there has been essentially no consideration of the important problem of outlier detection. In particular, for certain subjects, the neuroimaging data are so poor quality that the network cannot be reliably reconstructed. For such subjects, the resulting adjacency matrix may be mostly zero or exhibit a bizarre pattern not consistent with a functioning brain. These outlying networks may serve as influential points, contaminating subsequent statistical analyses. We propose a simple Outlier DetectIon for Networks (ODIN) method relying on an influence measure under a hierarchical generalized linear model for the adjacency matrices. An efficient computational algorithm is described, and ODIN is illustrated through simulations and an application to data from the UK Biobank.ODIN was successful in identifying moderate to extreme outliers. Removing such outliers can significantly change inferences in downstream applications.ODIN has been implemented in both Python and R and these implementations along with other code are publicly available at github.com/pritamdey/ODIN-python and github.com/pritamdey/ODIN-r, respectively.Supplementary data are available at Bioinformatics online.

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Published In

Bioinformatics (Oxford, England)

DOI

EISSN

1367-4811

ISSN

1367-4803

Publication Date

August 2022

Volume

38

Issue

16

Start / End Page

4011 / 4018

Related Subject Headings

  • Software
  • Neuroimaging
  • Humans
  • Brain
  • Bioinformatics
  • Algorithms
  • 49 Mathematical sciences
  • 46 Information and computing sciences
  • 31 Biological sciences
  • 08 Information and Computing Sciences
 

Citation

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Dey, P., Zhang, Z., & Dunson, D. B. (2022). Outlier detection for multi-network data. Bioinformatics (Oxford, England), 38(16), 4011–4018. https://doi.org/10.1093/bioinformatics/btac431
Dey, Pritam, Zhengwu Zhang, and David B. Dunson. “Outlier detection for multi-network data.Bioinformatics (Oxford, England) 38, no. 16 (August 2022): 4011–18. https://doi.org/10.1093/bioinformatics/btac431.
Dey P, Zhang Z, Dunson DB. Outlier detection for multi-network data. Bioinformatics (Oxford, England). 2022 Aug;38(16):4011–8.
Dey, Pritam, et al. “Outlier detection for multi-network data.Bioinformatics (Oxford, England), vol. 38, no. 16, Aug. 2022, pp. 4011–18. Epmc, doi:10.1093/bioinformatics/btac431.
Dey P, Zhang Z, Dunson DB. Outlier detection for multi-network data. Bioinformatics (Oxford, England). 2022 Aug;38(16):4011–4018.

Published In

Bioinformatics (Oxford, England)

DOI

EISSN

1367-4811

ISSN

1367-4803

Publication Date

August 2022

Volume

38

Issue

16

Start / End Page

4011 / 4018

Related Subject Headings

  • Software
  • Neuroimaging
  • Humans
  • Brain
  • Bioinformatics
  • Algorithms
  • 49 Mathematical sciences
  • 46 Information and computing sciences
  • 31 Biological sciences
  • 08 Information and Computing Sciences