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Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer.

Publication ,  Journal Article
Venkitachalam, S; Revoredo, L; Varadan, V; Fecteau, RE; Ravi, L; Lutterbaugh, J; Markowitz, SD; Willis, JE; Gerken, TA; Guda, K
Published in: Sci Rep
March 23, 2016

The molecular basis of aberrant protein glycosylation, a pathological alteration widespread in colorectal cancers (CRC), and the mechanisms by which it contributes to tumor progression remain largely unknown. We performed targeted re-sequencing of 430 glycosylation-associated genes in a series of patient-derived CRC cell lines (N = 31) and matched primary tumor tissues, identifying 12 new significantly mutated glycosylation-associated genes in colon cancer. In particular, we observed an enrichment of mutations in genes (B3GNT2, B4GALT2, ST6GALNAC2) involved in the biosynthesis of N- and Cores 1-3 O-linked glycans in the colon, accounting for ~16% of the CRCs tested. Analysis of independent large-scale tumor tissue datasets confirmed recurrent mutations within these genes in colon and other gastrointestinal cancers. Systematic biochemical and phenotypic characterization of the candidate wild-type and mutant glycosyltransferases demonstrated these mutations as either markedly altering protein localization, post-translational modification, encoded enzymatic activities and/or the migratory potential of colon carcinoma cells. These findings suggest that functionally deleterious mutations in glycosyltransferase genes in part underlie aberrant glycosylation, and contribute to the pathogenesis of molecular subsets of colon and other gastrointestinal malignancies.

Duke Scholars

Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

March 23, 2016

Volume

6

Start / End Page

23642

Location

England

Related Subject Headings

  • Sialyltransferases
  • Protein Processing, Post-Translational
  • Polysaccharides
  • N-Acetylglucosaminyltransferases
  • Humans
  • Glycosyltransferases
  • Glycosylation
  • Genetic Predisposition to Disease
  • Gene Expression Regulation, Neoplastic
  • Galactosyltransferases
 

Citation

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Venkitachalam, S., Revoredo, L., Varadan, V., Fecteau, R. E., Ravi, L., Lutterbaugh, J., … Guda, K. (2016). Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer. Sci Rep, 6, 23642. https://doi.org/10.1038/srep23642
Venkitachalam, Srividya, Leslie Revoredo, Vinay Varadan, Ryan E. Fecteau, Lakshmeswari Ravi, James Lutterbaugh, Sanford D. Markowitz, Joseph E. Willis, Thomas A. Gerken, and Kishore Guda. “Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer.Sci Rep 6 (March 23, 2016): 23642. https://doi.org/10.1038/srep23642.
Venkitachalam S, Revoredo L, Varadan V, Fecteau RE, Ravi L, Lutterbaugh J, et al. Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer. Sci Rep. 2016 Mar 23;6:23642.
Venkitachalam, Srividya, et al. “Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer.Sci Rep, vol. 6, Mar. 2016, p. 23642. Pubmed, doi:10.1038/srep23642.
Venkitachalam S, Revoredo L, Varadan V, Fecteau RE, Ravi L, Lutterbaugh J, Markowitz SD, Willis JE, Gerken TA, Guda K. Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer. Sci Rep. 2016 Mar 23;6:23642.

Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

March 23, 2016

Volume

6

Start / End Page

23642

Location

England

Related Subject Headings

  • Sialyltransferases
  • Protein Processing, Post-Translational
  • Polysaccharides
  • N-Acetylglucosaminyltransferases
  • Humans
  • Glycosyltransferases
  • Glycosylation
  • Genetic Predisposition to Disease
  • Gene Expression Regulation, Neoplastic
  • Galactosyltransferases