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A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies.

Publication ,  Journal Article
Johnson, S; Zimmerman, B; Odeen, H; Shea, J; Winkler, N; Factor, R; Joshi, S; Payne, A
Published in: IEEE Trans Biomed Eng
January 2024

OBJECTIVE: We present the development of a non-contrast multi-parametric magnetic resonance (MPMR) imaging biomarker to assess treatment outcomes for magnetic resonance-guided focused ultrasound (MRgFUS) ablations of localized tumors. Images obtained immediately following MRgFUS ablation were inputs for voxel-wise supervised learning classifiers, trained using registered histology as a label for thermal necrosis. METHODS: VX2 tumors in New Zealand white rabbits quadriceps were thermally ablated using an MRgFUS system under 3 T MRI guidance. Animals were re-imaged three days post-ablation and euthanized. Histological necrosis labels were created by 3D registration between MR images and digitized H&E segmentations of thermal necrosis to enable voxel-wise classification of necrosis. Supervised MPMR classifier inputs included maximum temperature rise, cumulative thermal dose (CTD), post-FUS differences in T2-weighted images, and apparent diffusion coefficient, or ADC, maps. A logistic regression, support vector machine, and random forest classifier were trained in red a leave-one-out strategy in test data from four subjects. RESULTS: In the validation dataset, the MPMR classifiers achieved higher recall and Dice than a clinically adopted 240 cumulative equivalent minutes at 43 °C (CEM 43) threshold (0.43) in all subjects. The average Dice scores of overlap with the registered histological label for the logistic regression (0.63) and support vector machine (0.63) MPMR classifiers were within 6% of the acute contrast-enhanced non-perfused volume (0.67). CONCLUSIONS: Voxel-wise registration of MPMR data to histological outcomes facilitated supervised learning of an accurate non-contrast MR biomarker for MRgFUS ablations in a rabbit VX2 tumor model.

Duke Scholars

Published In

IEEE Trans Biomed Eng

DOI

EISSN

1558-2531

Publication Date

January 2024

Volume

71

Issue

1

Start / End Page

355 / 366

Location

United States

Related Subject Headings

  • Ultrasonography
  • Rabbits
  • Neoplasms
  • Necrosis
  • Magnetic Resonance Imaging
  • Humans
  • Diffusion Magnetic Resonance Imaging
  • Biomedical Engineering
  • Animals
  • 4603 Computer vision and multimedia computation
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Johnson, S., Zimmerman, B., Odeen, H., Shea, J., Winkler, N., Factor, R., … Payne, A. (2024). A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies. IEEE Trans Biomed Eng, 71(1), 355–366. https://doi.org/10.1109/TBME.2023.3303445
Johnson, Sara, Blake Zimmerman, Henrik Odeen, Jill Shea, Nicole Winkler, Rachel Factor, Sarang Joshi, and Allison Payne. “A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies.IEEE Trans Biomed Eng 71, no. 1 (January 2024): 355–66. https://doi.org/10.1109/TBME.2023.3303445.
Johnson S, Zimmerman B, Odeen H, Shea J, Winkler N, Factor R, et al. A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies. IEEE Trans Biomed Eng. 2024 Jan;71(1):355–66.
Johnson, Sara, et al. “A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies.IEEE Trans Biomed Eng, vol. 71, no. 1, Jan. 2024, pp. 355–66. Pubmed, doi:10.1109/TBME.2023.3303445.
Johnson S, Zimmerman B, Odeen H, Shea J, Winkler N, Factor R, Joshi S, Payne A. A Non-Contrast Multi-Parametric MRI Biomarker for Assessment of MR-Guided Focused Ultrasound Thermal Therapies. IEEE Trans Biomed Eng. 2024 Jan;71(1):355–366.

Published In

IEEE Trans Biomed Eng

DOI

EISSN

1558-2531

Publication Date

January 2024

Volume

71

Issue

1

Start / End Page

355 / 366

Location

United States

Related Subject Headings

  • Ultrasonography
  • Rabbits
  • Neoplasms
  • Necrosis
  • Magnetic Resonance Imaging
  • Humans
  • Diffusion Magnetic Resonance Imaging
  • Biomedical Engineering
  • Animals
  • 4603 Computer vision and multimedia computation