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Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles.

Publication ,  Journal Article
Barata, P; Gulati, S; Elliott, A; Hammers, HJ; Burgess, E; Gartrell, BA; Darabi, S; Bilen, MA; Basu, A; Geynisman, DM; Dawson, NA; Zhang, T ...
Published in: J Clin Invest
April 23, 2024

Molecular profiling of clear cell renal cell carcinoma (ccRCC) tumors of patients in a clinical trial has identified distinct transcriptomic signatures with predictive value, yet data in non-clear cell variants (nccRCC) are lacking. We examined the transcriptional profiles of RCC tumors representing key molecular pathways, from a multi-institutional, real-world patient cohort, including ccRCC and centrally reviewed nccRCC samples. ccRCC had increased angiogenesis signature scores compared with the heterogeneous group of nccRCC tumors, while cell cycle, fatty acid oxidation/AMPK signaling, and fatty acid synthesis/pentose phosphate signature scores were increased in one or more nccRCC subtypes. Among both ccRCC and nccRCC tumors, T effector scores statistically correlated with increased immune cell infiltration and were more commonly associated with immunotherapy-related markers (PD-L1+/TMBhi/MSIhi). In conclusion, this study provides evidence of differential gene transcriptional profiles among ccRCC versus nccRCC tumors, providing insights for optimizing personalized and histology-specific therapeutic strategies for patients with advanced RCC.

Duke Scholars

Published In

J Clin Invest

DOI

EISSN

1558-8238

Publication Date

April 23, 2024

Volume

134

Issue

11

Location

United States

Related Subject Headings

  • Transcriptome
  • Neoplasm Proteins
  • Middle Aged
  • Male
  • Kidney Neoplasms
  • Immunology
  • Humans
  • Gene Expression Regulation, Neoplastic
  • Gene Expression Profiling
  • Female
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Barata, P., Gulati, S., Elliott, A., Hammers, H. J., Burgess, E., Gartrell, B. A., … McKay, R. R. (2024). Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles. J Clin Invest, 134(11). https://doi.org/10.1172/JCI178915
Barata, Pedro, Shuchi Gulati, Andrew Elliott, Hans J. Hammers, Earle Burgess, Benjamin A. Gartrell, Sourat Darabi, et al. “Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles.J Clin Invest 134, no. 11 (April 23, 2024). https://doi.org/10.1172/JCI178915.
Barata P, Gulati S, Elliott A, Hammers HJ, Burgess E, Gartrell BA, et al. Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles. J Clin Invest. 2024 Apr 23;134(11).
Barata, Pedro, et al. “Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles.J Clin Invest, vol. 134, no. 11, Apr. 2024. Pubmed, doi:10.1172/JCI178915.
Barata P, Gulati S, Elliott A, Hammers HJ, Burgess E, Gartrell BA, Darabi S, Bilen MA, Basu A, Geynisman DM, Dawson NA, Zibelman MR, Zhang T, Wei S, Ryan CJ, Heath EI, Poorman KA, Nabhan C, McKay RR. Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles. J Clin Invest. 2024 Apr 23;134(11).

Published In

J Clin Invest

DOI

EISSN

1558-8238

Publication Date

April 23, 2024

Volume

134

Issue

11

Location

United States

Related Subject Headings

  • Transcriptome
  • Neoplasm Proteins
  • Middle Aged
  • Male
  • Kidney Neoplasms
  • Immunology
  • Humans
  • Gene Expression Regulation, Neoplastic
  • Gene Expression Profiling
  • Female