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Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization.

Publication ,  Journal Article
Jordan, SP; Hu, S; Rozada, I; McGivney, DF; Boyacioğlu, R; Jacob, DC; Huang, S; Beverland, M; Katzgraber, HG; Troyer, M; Griswold, MA; Ma, D
Published in: Proc Natl Acad Sci U S A
October 5, 2021

Magnetic resonance fingerprinting (MRF) is a method to extract quantitative tissue properties such as [Formula: see text] and [Formula: see text] relaxation rates from arbitrary pulse sequences using conventional MRI hardware. MRF pulse sequences have thousands of tunable parameters, which can be chosen to maximize precision and minimize scan time. Here, we perform de novo automated design of MRF pulse sequences by applying physics-inspired optimization heuristics. Our experimental data suggest that systematic errors dominate over random errors in MRF scans under clinically relevant conditions of high undersampling. Thus, in contrast to prior optimization efforts, which focused on statistical error models, we use a cost function based on explicit first-principles simulation of systematic errors arising from Fourier undersampling and phase variation. The resulting pulse sequences display features qualitatively different from previously used MRF pulse sequences and achieve fourfold shorter scan time than prior human-designed sequences of equivalent precision in [Formula: see text] and [Formula: see text] Furthermore, the optimization algorithm has discovered the existence of MRF pulse sequences with intrinsic robustness against shading artifacts due to phase variation.

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Published In

Proc Natl Acad Sci U S A

DOI

EISSN

1091-6490

Publication Date

October 5, 2021

Volume

118

Issue

40

Location

United States

Related Subject Headings

  • Phantoms, Imaging
  • Neoplasms
  • Magnetic Resonance Imaging
  • Image Processing, Computer-Assisted
  • Humans
  • Epilepsy
  • Computer Simulation
  • Brain
  • Automation
  • Algorithms
 

Citation

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Jordan, S. P., Hu, S., Rozada, I., McGivney, D. F., Boyacioğlu, R., Jacob, D. C., … Ma, D. (2021). Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization. Proc Natl Acad Sci U S A, 118(40). https://doi.org/10.1073/pnas.2020516118
Jordan, Stephen P., Siyuan Hu, Ignacio Rozada, Debra F. McGivney, Rasim Boyacioğlu, Darryl C. Jacob, Sherry Huang, et al. “Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization.Proc Natl Acad Sci U S A 118, no. 40 (October 5, 2021). https://doi.org/10.1073/pnas.2020516118.
Jordan SP, Hu S, Rozada I, McGivney DF, Boyacioğlu R, Jacob DC, et al. Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization. Proc Natl Acad Sci U S A. 2021 Oct 5;118(40).
Jordan, Stephen P., et al. “Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization.Proc Natl Acad Sci U S A, vol. 118, no. 40, Oct. 2021. Pubmed, doi:10.1073/pnas.2020516118.
Jordan SP, Hu S, Rozada I, McGivney DF, Boyacioğlu R, Jacob DC, Huang S, Beverland M, Katzgraber HG, Troyer M, Griswold MA, Ma D. Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization. Proc Natl Acad Sci U S A. 2021 Oct 5;118(40).
Journal cover image

Published In

Proc Natl Acad Sci U S A

DOI

EISSN

1091-6490

Publication Date

October 5, 2021

Volume

118

Issue

40

Location

United States

Related Subject Headings

  • Phantoms, Imaging
  • Neoplasms
  • Magnetic Resonance Imaging
  • Image Processing, Computer-Assisted
  • Humans
  • Epilepsy
  • Computer Simulation
  • Brain
  • Automation
  • Algorithms