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Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework.

Publication ,  Journal Article
Groopman, E; Mohan, S; Waddell, A; Wilke, M; Fernandez, R; Weaver, M; Chen, H; Liu, H; Bali, D; Baudet, H; Clarke, L; Hung, C; Mao, R ...
Published in: Mol Genet Metab
November 2024

Lysosomal diseases (LDs) are a heterogeneous group of rare genetic disorders that result in impaired lysosomal function, leading to progressive multiorgan system dysfunction. Accurate diagnosis is paramount to initiating targeted therapies early in the disease process in addition to providing prognostic information and appropriate support for families. In recent years, genomic sequencing technologies have become the first-line approach in the diagnosis of LDs. Understanding the clinical validity of the role of a gene in a disease is critical for the development of genomic technologies, such as which genes to include on next generation sequencing panels, and the interpretation of results from exome and genome sequencing. To this aim, the ClinGen Lysosomal Diseases Gene Curation Expert Panel utilized a semi-quantitative framework incorporating genetic and experimental evidence to assess the clinical validity of the 56 LD-associated genes on the Lysosomal Disease Network's list. Here, we describe the results, and the key themes and challenges encountered.

Duke Scholars

Published In

Mol Genet Metab

DOI

EISSN

1096-7206

Publication Date

November 2024

Volume

143

Issue

3

Start / End Page

108593

Location

United States

Related Subject Headings

  • Lysosomes
  • Lysosomal Storage Diseases
  • Humans
  • High-Throughput Nucleotide Sequencing
  • Genomics
  • Genetics & Heredity
  • 3202 Clinical sciences
  • 3105 Genetics
  • 1103 Clinical Sciences
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Groopman, E., Mohan, S., Waddell, A., Wilke, M., Fernandez, R., Weaver, M., … Goldstein, J. (2024). Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework. Mol Genet Metab, 143(3), 108593. https://doi.org/10.1016/j.ymgme.2024.108593
Groopman, Emily, Shruthi Mohan, Amber Waddell, Matheus Wilke, Raquel Fernandez, Meredith Weaver, Hongjie Chen, et al. “Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework.Mol Genet Metab 143, no. 3 (November 2024): 108593. https://doi.org/10.1016/j.ymgme.2024.108593.
Groopman E, Mohan S, Waddell A, Wilke M, Fernandez R, Weaver M, et al. Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework. Mol Genet Metab. 2024 Nov;143(3):108593.
Groopman, Emily, et al. “Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework.Mol Genet Metab, vol. 143, no. 3, Nov. 2024, p. 108593. Pubmed, doi:10.1016/j.ymgme.2024.108593.
Groopman E, Mohan S, Waddell A, Wilke M, Fernandez R, Weaver M, Chen H, Liu H, Bali D, Baudet H, Clarke L, Hung C, Mao R, Pinto E Vairo F, Racacho L, Yuzyuk T, Craigen WJ, Goldstein J. Assessment of genes involved in lysosomal diseases using the ClinGen clinical validity framework. Mol Genet Metab. 2024 Nov;143(3):108593.
Journal cover image

Published In

Mol Genet Metab

DOI

EISSN

1096-7206

Publication Date

November 2024

Volume

143

Issue

3

Start / End Page

108593

Location

United States

Related Subject Headings

  • Lysosomes
  • Lysosomal Storage Diseases
  • Humans
  • High-Throughput Nucleotide Sequencing
  • Genomics
  • Genetics & Heredity
  • 3202 Clinical sciences
  • 3105 Genetics
  • 1103 Clinical Sciences