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Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations.

Publication ,  Journal Article
Fino, NF; Inker, LA; Greene, T; Adingwupu, OM; Coresh, J; Seegmiller, J; Shlipak, MG; Jafar, TH; Kalil, R; Costa E Silva, VT; Gudnason, V ...
Published in: PloS one
January 2024

Assessing glomerular filtration rate (GFR) is critical for diagnosis, staging, and management of kidney disease. However, accuracy of estimated GFR (eGFR) is limited by large errors (>30% error present in >10-50% of patients), adversely impacting patient care. Errors often result from variation across populations of non-GFR determinants affecting the filtration markers used to estimate GFR. We hypothesized that combining multiple filtration markers with non-overlapping non-GFR determinants into a panel GFR could improve eGFR accuracy, extending current recognition that adding cystatin C to serum creatinine improves accuracy. Non-GFR determinants of markers can affect the accuracy of eGFR in two ways: first, increased variability in the non-GFR determinants of some filtration markers among application populations compared to the development population may result in outlying values for those markers. Second, systematic differences in the non-GFR determinants of some markers between application and development populations can lead to biased estimates in the application populations. Here, we propose and evaluate methods for estimating GFR based on multiple markers in applications with potentially higher rates of outlying predictors than in development data. We apply transfer learning to address systematic differences between application and development populations. We evaluated a panel of 8 markers (5 metabolites and 3 low molecular weight proteins) in 3,554 participants from 9 studies. Results show that contamination in two strongly predictive markers can increase imprecision by more than two-fold, but outlier identification with robust estimation can restore precision nearly fully to uncontaminated data. Furthermore, transfer learning can yield similar results with even modest training set sample size. Combining both approaches addresses both sources of error in GFR estimates. Once the laboratory challenge of developing a validated targeted assay for additional metabolites is overcome, these methods can inform the use of a panel eGFR across diverse clinical settings, ensuring accuracy despite differing non-GFR determinants.

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Published In

PloS one

DOI

EISSN

1932-6203

ISSN

1932-6203

Publication Date

January 2024

Volume

19

Issue

12

Start / End Page

e0313154

Related Subject Headings

  • Middle Aged
  • Male
  • Humans
  • Glomerular Filtration Rate
  • General Science & Technology
  • Female
  • Cystatin C
  • Creatinine
  • Biomarkers
  • Aged
 

Citation

APA
Chicago
ICMJE
MLA
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Fino, N. F., Inker, L. A., Greene, T., Adingwupu, O. M., Coresh, J., Seegmiller, J., … Haaland, B. (2024). Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations. PloS One, 19(12), e0313154. https://doi.org/10.1371/journal.pone.0313154
Fino, Nora F., Lesley A. Inker, Tom Greene, Ogechi M. Adingwupu, Josef Coresh, Jesse Seegmiller, Michael G. Shlipak, et al. “Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations.PloS One 19, no. 12 (January 2024): e0313154. https://doi.org/10.1371/journal.pone.0313154.
Fino NF, Inker LA, Greene T, Adingwupu OM, Coresh J, Seegmiller J, et al. Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations. PloS one. 2024 Jan;19(12):e0313154.
Fino, Nora F., et al. “Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations.PloS One, vol. 19, no. 12, Jan. 2024, p. e0313154. Epmc, doi:10.1371/journal.pone.0313154.
Fino NF, Inker LA, Greene T, Adingwupu OM, Coresh J, Seegmiller J, Shlipak MG, Jafar TH, Kalil R, Costa E Silva VT, Gudnason V, Levey AS, Haaland B. Panel estimated Glomerular Filtration Rate (GFR): Statistical considerations for maximizing accuracy in diverse clinical populations. PloS one. 2024 Jan;19(12):e0313154.

Published In

PloS one

DOI

EISSN

1932-6203

ISSN

1932-6203

Publication Date

January 2024

Volume

19

Issue

12

Start / End Page

e0313154

Related Subject Headings

  • Middle Aged
  • Male
  • Humans
  • Glomerular Filtration Rate
  • General Science & Technology
  • Female
  • Cystatin C
  • Creatinine
  • Biomarkers
  • Aged