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Assessing the role of volumetric brain information in multiple sclerosis progression.

Publication ,  Journal Article
Shen, AA; McLoughlin, A; Vernon, Z; Lin, J; Carano, RAD; Bickel, PJ; Song, Z; Huang, H
Published in: Computational and structural biotechnology journal
January 2025

Multiple sclerosis is a chronic autoimmune disease that affects the central nervous system. Understanding multiple sclerosis progression and identifying the implicated brain structures is crucial for personalized treatment decisions. Deformation-based morphometry utilizes anatomical magnetic resonance imaging to quantitatively assess volumetric brain changes at the voxel level, providing insight into how each brain region contributes to clinical progression with regards to neurodegeneration. Utilizing such voxel-level data from a relapsing multiple sclerosis clinical trial, we extend a model-agnostic feature importance metric to identify a robust and predictive feature set that corresponds to clinical progression. These features correspond to brain regions that are clinically meaningful in MS disease research, demonstrating their scientific relevance. When used to predict progression using classical survival models and 3D convolutional neural networks, the identified regions led to the best-performing models, demonstrating their prognostic strength. We also find that these features generalize well to other definitions of clinical progression and can compensate for the omission of highly prognostic clinical features, underscoring the predictive power and clinical relevance of deformation-based morphometry as a regional identification tool.

Duke Scholars

Published In

Computational and structural biotechnology journal

DOI

EISSN

2001-0370

ISSN

2001-0370

Publication Date

January 2025

Volume

27

Start / End Page

2014 / 2033

Related Subject Headings

  • 4601 Applied computing
  • 3101 Biochemistry and cell biology
  • 0802 Computation Theory and Mathematics
  • 0103 Numerical and Computational Mathematics
 

Citation

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Shen, A. A., McLoughlin, A., Vernon, Z., Lin, J., Carano, R. A. D., Bickel, P. J., … Huang, H. (2025). Assessing the role of volumetric brain information in multiple sclerosis progression. Computational and Structural Biotechnology Journal, 27, 2014–2033. https://doi.org/10.1016/j.csbj.2025.05.003
Shen, Andy A., Aidan McLoughlin, Zoe Vernon, Jonathan Lin, Richard A. D. Carano, Peter J. Bickel, Zhuang Song, and Haiyan Huang. “Assessing the role of volumetric brain information in multiple sclerosis progression.Computational and Structural Biotechnology Journal 27 (January 2025): 2014–33. https://doi.org/10.1016/j.csbj.2025.05.003.
Shen AA, McLoughlin A, Vernon Z, Lin J, Carano RAD, Bickel PJ, et al. Assessing the role of volumetric brain information in multiple sclerosis progression. Computational and structural biotechnology journal. 2025 Jan;27:2014–33.
Shen, Andy A., et al. “Assessing the role of volumetric brain information in multiple sclerosis progression.Computational and Structural Biotechnology Journal, vol. 27, Jan. 2025, pp. 2014–33. Epmc, doi:10.1016/j.csbj.2025.05.003.
Shen AA, McLoughlin A, Vernon Z, Lin J, Carano RAD, Bickel PJ, Song Z, Huang H. Assessing the role of volumetric brain information in multiple sclerosis progression. Computational and structural biotechnology journal. 2025 Jan;27:2014–2033.
Journal cover image

Published In

Computational and structural biotechnology journal

DOI

EISSN

2001-0370

ISSN

2001-0370

Publication Date

January 2025

Volume

27

Start / End Page

2014 / 2033

Related Subject Headings

  • 4601 Applied computing
  • 3101 Biochemistry and cell biology
  • 0802 Computation Theory and Mathematics
  • 0103 Numerical and Computational Mathematics