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Exploring chemical space with discrete, gradient, and hybrid optimization methods.

Publication ,  Journal Article
Balamurugan, D; Yang, W; Beratan, DN
Published in: The Journal of chemical physics
November 2008

Discrete, gradient, and hybrid optimization methods are applied to the challenge of discovering molecules with optimized properties. The cost and performance of the approaches were studied using a tight-binding model to maximize the static first electronic hyperpolarizability of molecules. Our analysis shows that discrete branch and bound methods provide robust strategies for inverse chemical design involving diverse chemical structures. Based on the linear combination of atomic potentials, a hybrid discrete-gradient optimization strategy significantly improves the performance of the gradient methods. The hybrid method performs better than dead-end elimination and competes with branch and bound and genetic algorithms. The branch and bound methods for these model Hamiltonians are more cost effective than genetic algorithms for moderate-sized molecular optimization.

Duke Scholars

Published In

The Journal of chemical physics

DOI

EISSN

1089-7690

ISSN

0021-9606

Publication Date

November 2008

Volume

129

Issue

17

Start / End Page

174105

Related Subject Headings

  • Polyenes
  • Polycyclic Compounds
  • Naphthacenes
  • Models, Chemical
  • Electrons
  • Costs and Cost Analysis
  • Computer Simulation
  • Chemical Physics
  • Algorithms
  • 51 Physical sciences
 

Citation

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ICMJE
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Balamurugan, D., Yang, W., & Beratan, D. N. (2008). Exploring chemical space with discrete, gradient, and hybrid optimization methods. The Journal of Chemical Physics, 129(17), 174105. https://doi.org/10.1063/1.2987711
Balamurugan, D., Weitao Yang, and David N. Beratan. “Exploring chemical space with discrete, gradient, and hybrid optimization methods.The Journal of Chemical Physics 129, no. 17 (November 2008): 174105. https://doi.org/10.1063/1.2987711.
Balamurugan D, Yang W, Beratan DN. Exploring chemical space with discrete, gradient, and hybrid optimization methods. The Journal of chemical physics. 2008 Nov;129(17):174105.
Balamurugan, D., et al. “Exploring chemical space with discrete, gradient, and hybrid optimization methods.The Journal of Chemical Physics, vol. 129, no. 17, Nov. 2008, p. 174105. Epmc, doi:10.1063/1.2987711.
Balamurugan D, Yang W, Beratan DN. Exploring chemical space with discrete, gradient, and hybrid optimization methods. The Journal of chemical physics. 2008 Nov;129(17):174105.

Published In

The Journal of chemical physics

DOI

EISSN

1089-7690

ISSN

0021-9606

Publication Date

November 2008

Volume

129

Issue

17

Start / End Page

174105

Related Subject Headings

  • Polyenes
  • Polycyclic Compounds
  • Naphthacenes
  • Models, Chemical
  • Electrons
  • Costs and Cost Analysis
  • Computer Simulation
  • Chemical Physics
  • Algorithms
  • 51 Physical sciences