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A five-gene phylogeny of Pezizomycotina.

Publication ,  Journal Article
Spatafora, JW; Sung, G-H; Johnson, D; Hesse, C; O'Rourke, B; Serdani, M; Spotts, R; Lutzoni, F; Hofstetter, V; Miadlikowska, J; Reeb, V ...
Published in: Mycologia
November 2006

Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results from weighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-lalpha) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.

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Published In

Mycologia

DOI

EISSN

1557-2536

ISSN

0027-5514

Publication Date

November 2006

Volume

98

Issue

6

Start / End Page

1018 / 1028

Related Subject Headings

  • Sequence Homology
  • RNA, Ribosomal, 28S
  • RNA, Ribosomal, 18S
  • RNA Polymerase II
  • Phylogeny
  • Peptide Elongation Factor 1
  • Mycology & Parasitology
  • Microscopy, Electron, Scanning
  • DNA, Ribosomal
  • DNA, Fungal
 

Citation

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Spatafora, J. W., Sung, G.-H., Johnson, D., Hesse, C., O’Rourke, B., Serdani, M., … Schoch, C. L. (2006). A five-gene phylogeny of Pezizomycotina. Mycologia, 98(6), 1018–1028. https://doi.org/10.3852/mycologia.98.6.1018
Spatafora, Joseph W., Gi-Ho Sung, Desiree Johnson, Cedar Hesse, Benjamin O’Rourke, Maryna Serdani, Robert Spotts, et al. “A five-gene phylogeny of Pezizomycotina.Mycologia 98, no. 6 (November 2006): 1018–28. https://doi.org/10.3852/mycologia.98.6.1018.
Spatafora JW, Sung G-H, Johnson D, Hesse C, O’Rourke B, Serdani M, et al. A five-gene phylogeny of Pezizomycotina. Mycologia. 2006 Nov;98(6):1018–28.
Spatafora, Joseph W., et al. “A five-gene phylogeny of Pezizomycotina.Mycologia, vol. 98, no. 6, Nov. 2006, pp. 1018–28. Epmc, doi:10.3852/mycologia.98.6.1018.
Spatafora JW, Sung G-H, Johnson D, Hesse C, O’Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Büdel B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL. A five-gene phylogeny of Pezizomycotina. Mycologia. 2006 Nov;98(6):1018–1028.

Published In

Mycologia

DOI

EISSN

1557-2536

ISSN

0027-5514

Publication Date

November 2006

Volume

98

Issue

6

Start / End Page

1018 / 1028

Related Subject Headings

  • Sequence Homology
  • RNA, Ribosomal, 28S
  • RNA, Ribosomal, 18S
  • RNA Polymerase II
  • Phylogeny
  • Peptide Elongation Factor 1
  • Mycology & Parasitology
  • Microscopy, Electron, Scanning
  • DNA, Ribosomal
  • DNA, Fungal