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A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy.

Publication ,  Journal Article
Wang, R; Ekem, L; Gallagher, J; Factor, RE; Hall, A; Ramanujam, N
Published in: J Biophotonics
May 2024

We demonstrate an automated two-step tumor segmentation method leveraging color information from brightfield images of fresh core needle biopsies of breast tissue. Three different color spaces (HSV, CIELAB, YCbCr) were explored for the segmentation task. By leveraging white-light and green-light images, we identified two different types of color transformations that could separate adipose from benign and tumor or cancerous tissue. We leveraged these two distinct color transformation methods in a two-step process where adipose tissue segmentation was followed by benign tissue segmentation thereby isolating the malignant region of the biopsy. Our tumor segmentation algorithm and imaging probe could highlight suspicious regions on unprocessed biopsy tissue to guide selection of areas most similar to malignant tissues for tissue pathology whether it be formalin fixed or frozen sections, expedite tissue selection for molecular testing, detect positive tumor margins, or serve an alternative to tissue pathology, in countries where these services are lacking.

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Published In

J Biophotonics

DOI

EISSN

1864-0648

Publication Date

May 2024

Volume

17

Issue

5

Start / End Page

e202300241

Location

Germany

Related Subject Headings

  • Optoelectronics & Photonics
  • Image Processing, Computer-Assisted
  • Humans
  • Female
  • Color
  • Breast Neoplasms
  • Breast
  • 3404 Medicinal and biomolecular chemistry
  • 3401 Analytical chemistry
  • 1004 Medical Biotechnology
 

Citation

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Wang, R., Ekem, L., Gallagher, J., Factor, R. E., Hall, A., & Ramanujam, N. (2024). A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy. J Biophotonics, 17(5), e202300241. https://doi.org/10.1002/jbio.202300241
Wang, Roujia, Lillian Ekem, Jennifer Gallagher, Rachel E. Factor, Allison Hall, and Nimmi Ramanujam. “A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy.J Biophotonics 17, no. 5 (May 2024): e202300241. https://doi.org/10.1002/jbio.202300241.
Wang R, Ekem L, Gallagher J, Factor RE, Hall A, Ramanujam N. A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy. J Biophotonics. 2024 May;17(5):e202300241.
Wang, Roujia, et al. “A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy.J Biophotonics, vol. 17, no. 5, May 2024, p. e202300241. Pubmed, doi:10.1002/jbio.202300241.
Wang R, Ekem L, Gallagher J, Factor RE, Hall A, Ramanujam N. A color-based tumor segmentation method for clinical ex vivo breast tissue assessment utilizing a multi-contrast brightfield imaging strategy. J Biophotonics. 2024 May;17(5):e202300241.
Journal cover image

Published In

J Biophotonics

DOI

EISSN

1864-0648

Publication Date

May 2024

Volume

17

Issue

5

Start / End Page

e202300241

Location

Germany

Related Subject Headings

  • Optoelectronics & Photonics
  • Image Processing, Computer-Assisted
  • Humans
  • Female
  • Color
  • Breast Neoplasms
  • Breast
  • 3404 Medicinal and biomolecular chemistry
  • 3401 Analytical chemistry
  • 1004 Medical Biotechnology