Skip to main content
Journal cover image

Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.

Publication ,  Journal Article
Chiu, SJ; Toth, CA; Bowes Rickman, C; Izatt, JA; Farsiu, S
Published in: Biomed Opt Express
May 1, 2012

This paper presents a generalized framework for segmenting closed-contour anatomical and pathological features using graph theory and dynamic programming (GTDP). More specifically, the GTDP method previously developed for quantifying retinal and corneal layer thicknesses is extended to segment objects such as cells and cysts. The presented technique relies on a transform that maps closed-contour features in the Cartesian domain into lines in the quasi-polar domain. The features of interest are then segmented as layers via GTDP. Application of this method to segment closed-contour features in several ophthalmic image types is shown. Quantitative validation experiments for retinal pigmented epithelium cell segmentation in confocal fluorescence microscopy images attests to the accuracy of the presented technique.

Duke Scholars

Published In

Biomed Opt Express

DOI

EISSN

2156-7085

Publication Date

May 1, 2012

Volume

3

Issue

5

Start / End Page

1127 / 1140

Location

United States

Related Subject Headings

  • 5102 Atomic, molecular and optical physics
  • 4003 Biomedical engineering
  • 3212 Ophthalmology and optometry
  • 0912 Materials Engineering
  • 0205 Optical Physics
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Chiu, S. J., Toth, C. A., Bowes Rickman, C., Izatt, J. A., & Farsiu, S. (2012). Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming. Biomed Opt Express, 3(5), 1127–1140. https://doi.org/10.1364/BOE.3.001127
Chiu, Stephanie J., Cynthia A. Toth, Catherine Bowes Rickman, Joseph A. Izatt, and Sina Farsiu. “Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.Biomed Opt Express 3, no. 5 (May 1, 2012): 1127–40. https://doi.org/10.1364/BOE.3.001127.
Chiu SJ, Toth CA, Bowes Rickman C, Izatt JA, Farsiu S. Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming. Biomed Opt Express. 2012 May 1;3(5):1127–40.
Chiu, Stephanie J., et al. “Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.Biomed Opt Express, vol. 3, no. 5, May 2012, pp. 1127–40. Pubmed, doi:10.1364/BOE.3.001127.
Chiu SJ, Toth CA, Bowes Rickman C, Izatt JA, Farsiu S. Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming. Biomed Opt Express. 2012 May 1;3(5):1127–1140.
Journal cover image

Published In

Biomed Opt Express

DOI

EISSN

2156-7085

Publication Date

May 1, 2012

Volume

3

Issue

5

Start / End Page

1127 / 1140

Location

United States

Related Subject Headings

  • 5102 Atomic, molecular and optical physics
  • 4003 Biomedical engineering
  • 3212 Ophthalmology and optometry
  • 0912 Materials Engineering
  • 0205 Optical Physics