Sina Farsiu
Professor in the Department of Biomedical Engineering
I am the director of the Vision and Image Processing (VIP) Laboratory. Along with my colleagues, we investigate how to improve early diagnostic methods and find new imaging biomarkers of ocular and neurological diseases in adults (e.g. age-related macular degeneration, diabetic retinopathy, Glaucoma, Alzheimer) and children (e.g. retinopathy or prematurity). We also develop automatic artificial intelligence machine learning and deep learning algorithms to detect/segment/quantify anatomical/pathological structures seen on medical images.
On another front, we study efficient signal processing based methods to overcome the theoretical and practical limitations that constrain the achievable resolution of any imaging device. Our approach, which is based on adaptive extraction and robust fusion of relevant information from the expensive and sophisticated as well as simple and cheap sensors, has found wide applications in improving the quality of imaging systems such as ophthalmic SD-OCT, digital X-ray mammography, electronic and optical microscopes, and commercial digital camcorders. We are also interested in pursuing statistical signal processing based projects, including super-resolution, demosaicing, deblurring, denoising, motion estimation, compressive sensing/adaptive sampling, and sensor fusion.
On another front, we study efficient signal processing based methods to overcome the theoretical and practical limitations that constrain the achievable resolution of any imaging device. Our approach, which is based on adaptive extraction and robust fusion of relevant information from the expensive and sophisticated as well as simple and cheap sensors, has found wide applications in improving the quality of imaging systems such as ophthalmic SD-OCT, digital X-ray mammography, electronic and optical microscopes, and commercial digital camcorders. We are also interested in pursuing statistical signal processing based projects, including super-resolution, demosaicing, deblurring, denoising, motion estimation, compressive sensing/adaptive sampling, and sensor fusion.
Current Research Interests
Focused on medical imaging and machine learning to improve the overall health and vision outcome of patients with ocular and neurological diseases (e.g., age-related macular degeneration, diabetic retinopathy, Alzheimer, and ALS) through earlier and personalized therapy.
Current Appointments & Affiliations
- Professor in the Department of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2021
- Associate Professor in the Department of Electrical and Computer Engineering, Electrical and Computer Engineering, Pratt School of Engineering 2018
- Professor of Computer Science, Computer Science, Trinity College of Arts & Sciences 2021
- Faculty Network Member of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2012
Contact Information
- Box 3802 Med Ctr, Durham, NC 27710
- CIEMAS 2575, Durham, NC 27708
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(919) 684-6642
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Academic Webpage
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Google Scholar
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Vision & Image Processing Lab
- Background
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Education, Training, & Certifications
- Postdoctoral Scholar, Electrical Engineering, University of California - Santa Cruz 2006 - 2007
- Research Assistant, Electrical Engineering, University of California - Santa Cruz 2001 - 2005
- Ph.D., University of California - Santa Cruz 2005
- M.S., University of Tehran (Iran) 2001
- B.S., Sharif University of Technology (Iran) 1999
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Previous Appointments & Affiliations
- Professor in Ophthalmology, Ophthalmology, Corneal Diseases, Ophthalmology 2021 - 2022
- Associate Professor in the Department of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2016 - 2020
- Associate Professor in the Department of Ophthalmology, Ophthalmology, Clinical Science Departments 2016 - 2020
- Associate Professor of Computer Science, Computer Science, Trinity College of Arts & Sciences 2017 - 2020
- Paul Ruffin Scarborough Distinguished Associate Professor of Engineering, Biomedical Engineering, Pratt School of Engineering 2019 - 2020
- Assistant Professor in the Department of Electrical and Computer Engineering, Electrical and Computer Engineering, Pratt School of Engineering 2013 - 2017
- Assistant Professor in the Department of Computer Science, Computer Science, Trinity College of Arts & Sciences 2013 - 2017
- Assistant Professor in the Department of Ophthalmology, Ophthalmology, Clinical Science Departments 2013 - 2016
- Assistant Professor in the Department of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2014 - 2016
- Assistant Professor of Ophthalmology, Ophthalmology, Clinical Science Departments 2009 - 2013
- Assistant Research Professor of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2009 - 2011
- Recognition
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In the News
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MAR 1, 2019 -
NOV 20, 2018 -
AUG 23, 2018 Pratt School of Engineering -
SEP 20, 2017 Pratt School of Engineering -
AUG 10, 2016 WUNC -
MAR 4, 2016 The News & Observer -
APR 29, 2015 The Daily Mail, Australian Associated Press -
AUG 27, 2014 Pratt School of Engineering -
FEB 10, 2014 Duke Research Blog
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- Expertise
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Subject Headings
- Aged
- Aged, 80 and over
- Algorithms
- Animals
- Anterior Chamber
- Antibodies, Bispecific
- Apolipoprotein E4
- Area Under Curve
- Artificial Intelligence
- Astigmatism
- Automatic Data Processing
- Automation
- Biometry
- Birth Weight
- Bruch Membrane
- Case-Control Studies
- Cataract Extraction
- Child, Preschool
- Choroid
- Choroid Diseases
- Color
- Colorimetry
- Complement
- Complement System Proteins
- Computer Graphics
- Computer Simulation
- Computer Systems
- Computers
- Contrast Media
- Contrast Sensitivity
- Cornea
- Cross-Sectional Studies
- Diabetes Mellitus, Type 1
- Diabetes Mellitus, Type 2
- Diabetic Retinopathy
- Diagnosis, Differential
- Diagnostic Techniques, Ophthalmological
- Disease Management
- Disease Models, Animal
- Disease Progression
- Dose-Response Relationship, Immunologic
- Dry Eye Syndromes
- Epiretinal Membrane
- Equipment Design
- Extravasation of Diagnostic and Therapeutic Materials
- Eye
- Eye Abnormalities
- Feasibility Studies
- Female
- Fluorescein Angiography
- Follow-Up Studies
- Fourier Analysis
- Fovea Centralis
- Fundus Oculi
- Geographic Atrophy
- Hematoma, Subdural
- Hispanic Americans
- Humans
- Hyperpigmentation
- Image Enhancement
- Image Interpretation, Computer-Assisted
- Image Processing, Computer-Assisted
- Imaging, Three-Dimensional
- Immunotherapy
- Infant, Extremely Low Birth Weight
- Infant, Newborn
- Infant, Premature
- Information Storage and Retrieval
- Intraocular Pressure
- Intraoperative Period
- Isotope Labeling
- Laser Coagulation
- Machine learning
- Macular Degeneration
- Macular Edema
- Magnetic Resonance Imaging
- Male
- Mice
- Mice, Inbred BALB C
- Mice, Knockout
- Mice, Transgenic
- Microscopy
- Microscopy, Confocal
- Middle Aged
- Models, Statistical
- Monitoring, Intraoperative
- Myopia
- Nerve Fibers
- Neural Networks (Computer)
- Numerical Analysis, Computer-Assisted
- Nystagmus, Pathologic
- Ocular Hypertension
- Ophthalmic Solutions
- Ophthalmologic Surgical Procedures
- Ophthalmoscopes
- Ophthalmoscopy
- Optic Disk
- Optical Phenomena
- Optical coherence tomography
- Optics and Photonics
- Organ Size
- Oxidative Stress
- Pattern Recognition, Automated
- Phantoms, Imaging
- Photography
- Photoreceptor Cells, Vertebrate
- Pigmentation Disorders
- Pilocarpine
- Point-of-Care Systems
- Predictive Value of Tests
- Prednisolone
- Pregnancy
- Premature Birth
- Prospective Studies
- ROC Curve
- Refraction, Ocular
- Regression Analysis
- Reproducibility of Results
- Retina
- Retinal Detachment
- Retinal Diseases
- Retinal Drusen
- Retinal Ganglion Cells
- Retinal Hemorrhage
- Retinal Neovascularization
- Retinal Neurons
- Retinal Perforations
- Retinal Photoreceptor Cell Inner Segment
- Retinal Photoreceptor Cell Outer Segment
- Retinal Pigment Epithelium
- Retinal Vessels
- Retinopathy of Prematurity
- Retinoschisis
- Retrospective Studies
- Risk Factors
- Scanning laser ophthalmoscopy
- Scattering, Radiation
- Sclera
- Sensitivity and Specificity
- Severity of Illness Index
- Shaken Baby Syndrome
- Signal Processing, Computer-Assisted
- Signal-To-Noise Ratio
- Software
- Subretinal Fluid
- Subtraction Technique
- Surgery, Computer-Assisted
- Sus scrofa
- Swine
- Term Birth
- Tomography, Optical Coherence
- Triamcinolone Acetonide
- Video Recording
- Vision Disorders
- Vision, Low
- Visual Acuity
- Visual Fields
- Vitrectomy
- Vitreous Body
- Wound Healing
- Young Adult
- Research
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Selected Grants
- Blink, Lacrimation, and Nociception: Precision Mapping and Integrated Atlas Generation of Corneal Trigeminal Afferents in Mice and Humans awarded by National Institutes of Health 2022 - 2027
- Elucidating perifoveal vascular development in infants awarded by National Institutes of Health 2022 - 2027
- Retinal Light Scattering Measurements as a Clinical Biomarker of Alzheimer's Disease awarded by National Institutes of Health 2022 - 2027
- NAC Attack, a phase-3, multicenter, randomized, placebo-controlled trial with retinitis pigmentosa: OCT Reading Center awarded by National Institutes of Health 2022 - 2027
- Soft drusen in rhesus macaques as a nonhuman primate model of early age-related macular degeneration awarded by University of California - Davis 2021 - 2025
- Automated Software for Analysis of Adaptive Optics Scanning Optical Coherence Tomography Images awarded by Foundation Fighting Blindness, Inc 2021 - 2024
- OCT measurement of trabecular meshwork function in vivo awarded by Georgia Institute of Technology 2020 - 2023
- Quantitative assessment of glaucomatous conventional outflow dynamics awarded by National Institutes of Health 2019 - 2023
- The BCI (Brain Computer Interface) Glaucoma Study: Objective Home-Based Detection of Progressive Visual Function Loss in Glaucoma awarded by National Institutes of Health 2019 - 2023
- Application of deep machine learning for identifying structural and functional deficits in retinitis pigmentosa awarded by Retina Foundation of the Southwest 2019 - 2022
- Screening for pediatric retinal diseases using artificial intelligence and wide-field fundus imaging awarded by VitreoRetinal Surgery Foundation 2021 - 2022
- Advanced a/LCI systems for improved clinical utility awarded by National Institutes of Health 2016 - 2022
- Artificial Intelligence-aided Screening of Potentially Blinding Pediatric Retinal Diseases awarded by Hartwell Foundation 2020 - 2022
- Compressive aperture super-resolution in vivo microscopy awarded by National Science Foundation 2019 - 2022
- Portable motion-stabilized optical coherence tomography for eye care in acute care settings awarded by National Institutes of Health 2018 - 2022
- Quantifying Microbial Keratitis Features to Predict Outcomes awarded by University of Michigan 2020 - 2022
- Handheld Portable Adaptive Optics Optical Coherence Tomography for Imaging Young Children awarded by National Institutes of Health 2019 - 2022
- Using Machine Learning to Identify Eye Disease in Optical Coherence Tomography Images Obtained from a Robotically-Aligned Scanner awarded by Research To Prevent Blindness, Inc. 2021
- Psychophysics-Guided Signal Processing for Retinal Prosthetics awarded by National Institutes of Health 2018 - 2021
- A Deep Learning Model to Objectively Quantify Glaucomatous Damage on Fundus Photographs: Validation and Application to a Teleophthalmology Screening Program awarded by National Institutes of Health 2020 - 2021
- Novel Experimental Model for Pseudoexfolliation Syndrome awarded by National Institutes of Health 2018 - 2020
- Training in Medical Imaging awarded by National Institutes of Health 2003 - 2020
- Coherent light scattering for early detection of Alzheimer's disease awarded by National Institutes of Health 2017 - 2020
- Handheld Portable Adaptive Optics Scanning Laser Ophthalmoscope for Imaging Young Children awarded by National Institutes of Health 2016 - 2019
- NCS-FO:Real-time optical readout and control of population neural activity with cellular resolution awarded by National Science Foundation 2015 - 2019
- RPB: 2014 Nelson Trust Award awarded by Research To Prevent Blindness, Inc. 2014 - 2019
- Automated Software for Analysis of Adaptive Optics Scanning Laser Ophthalmoscopy Images awarded by Foundation Fighting Blindness, Inc 2016 - 2019
- Flavoprotein Autofluorescence Imaging in AMD awarded by National Institutes of Health 2015 - 2018
- Computer Aided Classification of Diabetic Macular Edema awarded by National Institutes of Health 2012 - 2018
- Temporal dynamics of retinal ganglion cell neurodegeneration in glaucoma awarded by National Institutes of Health 2015 - 2018
- Intraoperative OCT Guidance of Intraocular Surgery awarded by National Institutes of Health 2013 - 2017
- OCT measurement of TM/SC stiffness in living mice awarded by BrightFocus Foundation 2015 - 2017
- Smartphone Ophthalmoscope Lens Vascularity awarded by Research Triangle Institute International 2015 - 2017
- UPenn - NEI Follow-up Study: Comparison of AMD Treatment Trials (CATT) YR3 awarded by University of Pennsylvania 2013 - 2017
- Using Optical Coherence Tomography to Elucidate Optic Nerve Development in Healthy Infants and Children awarded by Knights Templar Eye Foundation, Inc. 2015 - 2017
- Field Deployable Optical Coherence Tomography for Triage of Ocular Trauma awarded by United States Army Medical Research and Materiel Command 2012 - 2016
- Smartphone ophthalmoscope image analysis of lens capsule vascularity to estimate preterm gestational age awarded by Research Triangle Institute 2014 - 2016
- Novel Retinal Biomarkers for Early Detection of Alzheimer's Disease awarded by Alzheimer's Association 2013 - 2016
- Coherent light scattering for early detection of retinal disease awarded by National Institutes of Health 2013 - 2016
- Coordinating Center for the Comparison of AMD Treatments Trials awarded by University of Pennsylvania 2014 - 2015
- Portable Motion Compensated SDOCT System for Imaging Young Children awarded by National Institutes of Health 2012 - 2014
- Real Time Intraoperative SDOCT for Vitreoretinal Surgery awarded by National Institutes of Health 2009 - 2012
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External Relationships
- Optical Society of America (Optica)
- Roche
- Universities and other research entities. I usually give a few lectures a year and they have a small amount of speaker honoraria
- University of California
- Publications & Artistic Works
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Selected Publications
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Academic Articles
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Loo, Jessica, Kelvin Y. C. Teo, Chinmayi H. Vyas, Janice Marie N. Jordan-Yu, Amalia B. Juhari, Glenn J. Jaffe, Chui Ming Gemmy Cheung, and Sina Farsiu. “Joint Multimodal Deep Learning-based Automatic Segmentation of Indocyanine Green Angiography and OCT Images for Assessment of Polypoidal Choroidal Vasculopathy Biomarkers.” Ophthalmology Science 3, no. 3 (September 2023): 100292. https://doi.org/10.1016/j.xops.2023.100292.Full Text
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Rasti, Reza, Armin Biglari, Mohammad Rezapourian, Ziyun Yang, and Sina Farsiu. “RetiFluidNet: A Self-Adaptive and Multi-Attention Deep Convolutional Network for Retinal OCT Fluid Segmentation.” Ieee Transactions on Medical Imaging 42, no. 5 (May 2023): 1413–23. https://doi.org/10.1109/tmi.2022.3228285.Full Text
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Soltanian-Zadeh, Somayyeh, Zhuolin Liu, Yan Liu, Ayoub Lassoued, Catherine A. Cukras, Donald T. Miller, Daniel X. Hammer, and Sina Farsiu. “Deep learning-enabled volumetric cone photoreceptor segmentation in adaptive optics optical coherence tomography images of normal and diseased eyes.” Biomedical Optics Express 14, no. 2 (February 2023): 815–33. https://doi.org/10.1364/boe.478693.Full Text
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Wang, Ruikang K., and Sina Farsiu. “Biomedical Optics Express recognizes the best paper prize winners: editorial.” Biomedical Optics Express 14, no. 2 (February 2023): 985–86. https://doi.org/10.1364/boe.486310.Full Text
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Lad, Eleonora M., Jacque L. Duncan, Wendi Liang, Maureen G. Maguire, Allison R. Ayala, Isabelle Audo, David G. Birch, et al. “Baseline Microperimetry and OCT in the RUSH2A Study: Structure-Function Association and Correlation With Disease Severity.” Am J Ophthalmol 244 (December 2022): 98–116. https://doi.org/10.1016/j.ajo.2022.08.013.Full Text Link to Item
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Abraham, Joseph R., Glenn J. Jaffe, Peter K. Kaiser, Stephanie J. Chiu, Jessica Loo, Sina Farsiu, Laurens Bouckaert, et al. “Impact of Baseline Quantitative OCT Features on Response to Risuteganib for the Treatment of Dry Age-Related Macular Degeneration: The Importance of Outer Retinal Integrity.” Ophthalmol Retina 6, no. 11 (November 2022): 1019–27. https://doi.org/10.1016/j.oret.2022.05.002.Full Text Link to Item
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Loo, Jessica, Glenn J. Jaffe, Jacque L. Duncan, David G. Birch, and Sina Farsiu. “VALIDATION OF A DEEP LEARNING-BASED ALGORITHM FOR SEGMENTATION OF THE ELLIPSOID ZONE ON OPTICAL COHERENCE TOMOGRAPHY IMAGES OF AN USH2A-RELATED RETINAL DEGENERATION CLINICAL TRIAL.” Retina 42, no. 7 (July 1, 2022): 1347–55. https://doi.org/10.1097/IAE.0000000000003448.Full Text Link to Item
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Lad, Eleonora, Karim Sleiman, David L. Banks, Sanjay Hariharan, Traci Clemons, Rolf Herrmann, Daniyar Dauletbekov, et al. “Machine learning OCT predictors of progression from intermediate age-related macular degeneration to geographic atrophy and vision loss.” Ophthalmol Sci 2, no. 2 (June 2022). https://doi.org/10.1016/j.xops.2022.100160.Full Text Link to Item
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Zhou, K. C., R. P. McNabb, R. Qian, S. Degan, A. H. Dhalla, S. Farsiu, and J. A. Izatt. “Computational 3D microscopy with optical coherence refraction tomography.” Optica 9, no. 6 (June 1, 2022): 593–601. https://doi.org/10.1364/OPTICA.454860.Full Text
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Loo, Jessica, Cindy X. Cai, John Choong, Emily Y. Chew, Martin Friedlander, Glenn J. Jaffe, and Sina Farsiu. “Deep learning-based classification and segmentation of retinal cavitations on optical coherence tomography images of macular telangiectasia type 2.” The British Journal of Ophthalmology 106, no. 3 (March 2022): 396–402. https://doi.org/10.1136/bjophthalmol-2020-317131.Full Text
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Wang, Ruikang K., and Sina Farsiu. “Editorial from the New Editor-in-Chief and the New Deputy Editor.” Biomedical Optics Express 13, no. 2 (February 2022): 980–81. https://doi.org/10.1364/boe.454385.Full Text
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Choy, Kevin C., Guorong Li, W Daniel Stamer, and Sina Farsiu. “Open-source deep learning-based automatic segmentation of mouse Schlemm's canal in optical coherence tomography images.” Exp Eye Res 214 (January 2022): 108844. https://doi.org/10.1016/j.exer.2021.108844.Full Text Link to Item
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Hasan, A., J. M. Pereira, S. Farsiu, and V. Tarokh. “Identifying Latent Stochastic Differential Equations.” Ieee Transactions on Signal Processing 70 (January 1, 2022): 89–104. https://doi.org/10.1109/TSP.2021.3131723.Full Text
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Yang, Ziyun, Somayyeh Soltanian-Zadeh, and Sina Farsiu. “BiconNet: An Edge-preserved Connectivity-based Approach for Salient Object Detection.” Pattern Recognition 121 (January 2022): 108231. https://doi.org/10.1016/j.patcog.2021.108231.Full Text
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Zhou, K. C., A. H. Dhalla, R. P. McNabb, R. Qian, S. Farsiu, and J. A. Izatt. “High-speed multiview imaging approaching 4pi steradians using conic section mirrors: Theoretical and practical considerations.” Journal of the Optical Society of America A: Optics and Image Science, and Vision 38, no. 12 (December 1, 2021): 1810–22. https://doi.org/10.1364/JOSAA.440592.Full Text
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Zhou, Kevin C., Al-Hafeez Dhalla, Ryan P. McNabb, Ruobing Qian, Sina Farsiu, and Joseph A. Izatt. “High-speed multiview imaging approaching 4pi steradians using conic section mirrors: theoretical and practical considerations.” Journal of the Optical Society of America A 38, no. 12 (December 1, 2021): 1810–1810. https://doi.org/10.1364/josaa.440592.Full Text
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Zhou, K. C., S. Farsiu, and J. A. Izatt. “Optical Coherence Refraction Tomography.” Optics and Photonics News 32, no. 11 (November 1, 2021): 30–37. https://doi.org/10.1364/OPN.32.11.000030.Full Text
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Loo, Jessica, Maria A. Woodward, Venkatesh Prajna, Matthias F. Kriegel, Mercy Pawar, Mariam Khan, Leslie M. Niziol, and Sina Farsiu. “Open-Source Automatic Biomarker Measurement on Slit-Lamp Photography to Estimate Visual Acuity in Microbial Keratitis.” Translational Vision Science & Technology 10, no. 12 (October 2021): 2. https://doi.org/10.1167/tvst.10.12.2.Full Text
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Yang, Ziyun, Somayyeh Soltanian-Zadeh, Kengyeh K. Chu, Haoran Zhang, Lama Moussa, Ariel E. Watts, Nicholas J. Shaheen, Adam Wax, and Sina Farsiu. “Connectivity-based deep learning approach for segmentation of the epithelium in in vivo human esophageal OCT images.” Biomedical Optics Express 12, no. 10 (October 2021): 6326–40. https://doi.org/10.1364/boe.434775.Full Text
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Kim, Dong Yoon, Jessica Loo, Sina Farsiu, and Glenn J. Jaffe. “COMPARISON OF SINGLE DRUSEN SIZE ON COLOR FUNDUS PHOTOGRAPHY AND SPECTRAL-DOMAIN OPTICAL COHERENCE TOMOGRAPHY.” Retina 41, no. 8 (August 1, 2021): 1715–22. https://doi.org/10.1097/IAE.0000000000003099.Full Text Link to Item
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Bao, Yijun, Somayyeh Soltanian-Zadeh, Sina Farsiu, and Yiyang Gong. “Segmentation of Neurons from Fluorescence Calcium Recordings Beyond Real-time.” Nature Machine Intelligence 3, no. 7 (July 2021): 590–600. https://doi.org/10.1038/s42256-021-00342-x.Full Text
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Sastry, Ananth, Jianwei D. Li, William Raynor, Christian Viehland, Zhenxi Song, Liangyu Xu, Sina Farsiu, Joseph A. Izatt, Cynthia A. Toth, and Lejla Vajzovic. “Microscope-Integrated OCT-Guided Volumetric Measurements of Subretinal Blebs Created by a Suprachoroidal Approach.” Transl Vis Sci Technol 10, no. 7 (June 1, 2021): 24. https://doi.org/10.1167/tvst.10.7.24.Full Text Link to Item
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Mangalesh, Shwetha, Neeru Sarin, Brendan McGeehan, S Grace Prakalapakorn, Du Tran-Viet, C Michael Cotten, Sharon F. Freedman, Maureen G. Maguire, Cynthia A. Toth, and Cynthia A. BabySTEPS Group. “Preterm Infant Stress During Handheld Optical Coherence Tomography vs Binocular Indirect Ophthalmoscopy Examination for Retinopathy of Prematurity.” Jama Ophthalmol 139, no. 5 (May 1, 2021): 567–74. https://doi.org/10.1001/jamaophthalmol.2021.0377.Full Text Link to Item
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Pasricha, Malini Veerappan, Vincent Tai, Karim Sleiman, Katrina Winter, Stephanie J. Chiu, Sina Farsiu, Sandra S. Stinnett, et al. “Local Anatomic Precursors to New-Onset Geographic Atrophy in Age-Related Macular Degeneration as Defined on OCT.” Ophthalmol Retina 5, no. 5 (May 2021): 396–408. https://doi.org/10.1016/j.oret.2020.12.010.Full Text Link to Item
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Soltanian-Zadeh, Somayyeh, Kazuhiro Kurokawa, Zhuolin Liu, Furu Zhang, Osamah Saeedi, Daniel X. Hammer, Donald T. Miller, and Sina Farsiu. “Weakly supervised individual ganglion cell segmentation from adaptive optics OCT images for glaucomatous damage assessment.” Optica 8, no. 5 (May 2021): 642–51. https://doi.org/10.1364/optica.418274.Full Text
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Li, Guorong, Chanyoung Lee, A Thomas Read, Ke Wang, Jungmin Ha, Megan Kuhn, Iris Navarro, et al. “Anti-fibrotic activity of a rho-kinase inhibitor restores outflow function and intraocular pressure homeostasis.” Elife 10 (March 30, 2021). https://doi.org/10.7554/eLife.60831.Full Text Link to Item
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Hasan, Ali, Khalil Elkhalil, Yuting Ng, Joao M. Pereira, Sina Farsiu, Jose H. Blanchet, and Vahid Tarokh. “Modeling Extremes with d-max-decreasing Neural Networks,” February 17, 2021.Link to Item
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Mukkamala, Lekha K., Jaycob Avaylon, R Joel Welch, Amirfarbod Yazdanyar, Parisa Emami-Naeini, Sophia Wong, Jordan Storkersen, et al. “Intraoperative Retinal Changes May Predict Surgical Outcomes After Epiretinal Membrane Peeling.” Translational Vision Science & Technology 10, no. 2 (February 2021): 36. https://doi.org/10.1167/tvst.10.2.36.Full Text
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Zhou, K. C., R. Qian, A. H. Dhalla, S. Farsiu, and J. A. Izatt. “Unified k-space theory of optical coherence tomography.” Advances in Optics and Photonics 13, no. 2 (January 1, 2021): 462–514. https://doi.org/10.1364/AOP.417102.Full Text
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Cai, Cindy X., John Choong, Sina Farsiu, Stephanie J. Chiu, Emily Y. Chew, and Glenn J. Jaffe. “Retinal cavitations in macular telangiectasia type 2 (MacTel): longitudinal structure-function correlations.” The British Journal of Ophthalmology 105, no. 1 (January 2021): 109–12. https://doi.org/10.1136/bjophthalmol-2019-315416.Full Text
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Elkhalil, Khalil, Ali Hasan, Jie Ding, Sina Farsiu, and Vahid Tarokh. “Fisher Auto-Encoders.” 24th International Conference on Artificial Intelligence and Statistics (Aistats) 130 (2021): 352–60.Link to Item
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Loo, Jessica, Matthias F. Kriegel, Megan M. Tuohy, Kyeong Hwan Kim, Venkatesh Prajna, Maria A. Woodward, and Sina Farsiu. “Open-Source Automatic Segmentation of Ocular Structures and Biomarkers of Microbial Keratitis on Slit-Lamp Photography Images Using Deep Learning.” Ieee Journal of Biomedical and Health Informatics 25, no. 1 (January 2021): 88–99. https://doi.org/10.1109/jbhi.2020.2983549.Full Text
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Song, Zhenxi, Liangyu Xu, Jiang Wang, Reza Rasti, Ananth Sastry, Jianwei D. Li, William Raynor, et al. “Lightweight Learning-Based Automatic Segmentation of Subretinal Blebs on Microscope-Integrated Optical Coherence Tomography Images.” Am J Ophthalmol 221 (January 2021): 154–68. https://doi.org/10.1016/j.ajo.2020.07.020.Full Text Link to Item
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Zhou, Kevin C., Colin Cooke, Jaehee Park, Ruobing Qian, Roarke Horstmeyer, Joseph A. Izatt, and Sina Farsiu. “Mesoscopic photogrammetry with an unstabilized phone camera.” Cvpr 2021, December 10, 2020.Link to Item
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Kriegel, Matthias F., Jessica Loo, Sina Farsiu, Venkatesh Prajna, Megan Tuohy, Kyeong Hwan Kim, Autumn N. Valicevic, et al. “Measurement Reliability for Keratitis Morphology.” Cornea 39, no. 12 (December 2020): 1503–9. https://doi.org/10.1097/ico.0000000000002470.Full Text
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Liu, TY Alvin, Sina Farsiu, and Daniel S. Ting. “Generative adversarial networks to predict treatment response for neovascular age-related macular degeneration: interesting, but is it useful?” The British Journal of Ophthalmology 104, no. 12 (December 2020): 1629–30. https://doi.org/10.1136/bjophthalmol-2020-316300.Full Text
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Duncan, Jacque L., Wendi Liang, Maureen G. Maguire, Isabelle Audo, Allison R. Ayala, David G. Birch, Joseph Carroll, et al. “Baseline Visual Field Findings in the RUSH2A Study: Associated Factors and Correlation With Other Measures of Disease Severity.” Am J Ophthalmol 219 (November 2020): 87–100. https://doi.org/10.1016/j.ajo.2020.05.024.Full Text Open Access Copy Link to Item
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Hagan, Kristen, Theodore DuBose, David Cunefare, Gar Waterman, Jongwan Park, Corey Simmerer, Anthony N. Kuo, Ryan P. McNabb, Joseph A. Izatt, and Sina Farsiu. “Multimodal handheld adaptive optics scanning laser ophthalmoscope.” Opt Lett 45, no. 17 (September 1, 2020): 4940–43. https://doi.org/10.1364/OL.402392.Full Text Link to Item
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Li, Guorong, Heather Schmitt, William M. Johnson, Chanyoung Lee, Iris Navarro, Jenny Cui, Todd Fleming, et al. “Integral role for lysyl oxidase-like-1 in conventional outflow tissue function and behavior.” Faseb J 34, no. 8 (August 2020): 10762–77. https://doi.org/10.1096/fj.202000702RR.Full Text Link to Item
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Tran, Tu M., Soohyun Kim, Kira H. Lin, Sook Hyun Chung, Sangwan Park, Yevgeniy Sazhnyev, Yinwen Wang, et al. “Quantitative Fundus Autofluorescence in Rhesus Macaques in Aging and Age-Related Drusen.” Investigative Ophthalmology & Visual Science 61, no. 8 (July 2020): 16. https://doi.org/10.1167/iovs.61.8.16.Full Text
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Huang, Ouwen, Will Long, Nick Bottenus, Marcelo Lerendegui, Gregg E. Trahey, Sina Farsiu, and Mark L. Palmeri. “MimickNet, Mimicking Clinical Image Post- Processing Under Black-Box Constraints.” Ieee Transactions on Medical Imaging 39, no. 6 (June 2020): 2277–86. https://doi.org/10.1109/tmi.2020.2970867.Full Text
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Song, Ge, Zachary A. Steelman, Stella Finkelstein, Ziyun Yang, Ludovic Martin, Kengyeh K. Chu, Sina Farsiu, Vadim Y. Arshavsky, and Adam Wax. “Multimodal Coherent Imaging of Retinal Biomarkers of Alzheimer's Disease in a Mouse Model.” Sci Rep 10, no. 1 (May 13, 2020): 7912. https://doi.org/10.1038/s41598-020-64827-2.Full Text Link to Item
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Hasan, A., J. M. Pereira, R. Ravier, S. Farsiu, and V. Tarokh. “Learning Partial Differential Equations from Data Using Neural Networks.” Icassp, Ieee International Conference on Acoustics, Speech and Signal Processing Proceedings 2020-May (May 1, 2020): 3962–66. https://doi.org/10.1109/ICASSP40776.2020.9053750.Full Text
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Zhou, Kevin C., Ruobing Qian, Sina Farsiu, and Joseph A. Izatt. “Spectroscopic optical coherence refraction tomography.” Optics Letters 45, no. 7 (April 2020): 2091–94. https://doi.org/10.1364/ol.389703.Full Text
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Woertz, Erica N., Bisola S. Omoba, Taylor M. Dunn, Stephanie J. Chiu, Sina Farsiu, Sasha Strul, C Gail Summers, Arlene V. Drack, and Joseph Carroll. “Assessing Ganglion Cell Layer Topography in Human Albinism Using Optical Coherence Tomography.” Investigative Ophthalmology & Visual Science 61, no. 3 (March 2020): 36. https://doi.org/10.1167/iovs.61.3.36.Full Text
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Yiu, Glenn, Sook Hyun Chung, Iris Natalie Mollhoff, Yinwen Wang, Uyen Tu Nguyen, Bradley Shibata, David Cunefare, Sina Farsiu, Jeffrey Roberts, and Sara M. Thomasy. “Long-term Evolution and Remodeling of Soft Drusen in Rhesus Macaques.” Investigative Ophthalmology & Visual Science 61, no. 2 (February 2020): 32. https://doi.org/10.1167/iovs.61.2.32.Full Text
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Chen, Xing D., Amro Omari, Min Hwang, Leon Kwark, Natalie Dakki, Sina Farsiu, and Thomas W. Gardner. “Treated PDR Reveals Age-Appropriate Vision Deterioration But Distorted Retinal Organization.” Translational Vision Science & Technology 9, no. 3 (February 2020): 3. https://doi.org/10.1167/tvst.9.3.3.Full Text
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Rasti, Reza, Michael J. Allingham, Priyatham S. Mettu, Sam Kavusi, Kishan Govind, Scott W. Cousins, and Sina Farsiu. “Deep learning-based single-shot prediction of differential effects of anti-VEGF treatment in patients with diabetic macular edema.” Biomed Opt Express 11, no. 2 (February 1, 2020): 1139–52. https://doi.org/10.1364/BOE.379150.Full Text Link to Item
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Wang, Depeng, Stephen Xu, Praruj Pant, Emily Redington, Somayyeh Soltanian-Zadeh, Sina Farsiu, and Yiyang Gong. “Hybrid light-sheet and light-field microscope for high resolution and large volume neuroimaging.” Biomedical Optics Express 10, no. 12 (December 2019): 6595–6610. https://doi.org/10.1364/boe.10.006595.Full Text
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Zhou, Kevin C., Ruobing Qian, Simone Degan, Sina Farsiu, and Joseph A. Izatt. “Optical coherence refraction tomography.” Nature Photonics 13, no. 11 (November 2019): 794–802. https://doi.org/10.1038/s41566-019-0508-1.Full Text
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Yi, Ji, Alfredo Dubra, and Sina Farsiu. “Special Section Guest Editorial: Advances in Retinal Imaging.” Neurophotonics 6, no. 4 (October 2019): 041101. https://doi.org/10.1117/1.nph.6.4.041101.Full Text
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Alabduljalil, Talal, Carol A. Westall, Arun Reginald, Sina Farsiu, Stephanie J. Chiu, Alec Arshavsky, Cynthia A. Toth, and Wai-Ching Lam. “Demonstration of anatomical development of the human macula within the first 5 years of life using handheld OCT.” Int Ophthalmol 39, no. 7 (July 2019): 1533–42. https://doi.org/10.1007/s10792-018-0966-3.Full Text Link to Item
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Ong, Sally S., Alan D. Proia, Heather E. Whitson, Sina Farsiu, P Murali Doraiswamy, and Eleonora M. Lad. “Ocular amyloid imaging at the crossroad of Alzheimer's disease and age-related macular degeneration: implications for diagnosis and therapy.” J Neurol 266, no. 7 (July 2019): 1566–77. https://doi.org/10.1007/s00415-018-9028-z.Full Text Link to Item
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Chew, Emily Y., Traci E. Clemons, Glenn J. Jaffe, Charles A. Johnson, Sina Farsiu, Eleonora M. Lad, Robyn Guymer, et al. “Effect of Ciliary Neurotrophic Factor on Retinal Neurodegeneration in Patients with Macular Telangiectasia Type 2: A Randomized Clinical Trial.” Ophthalmology 126, no. 4 (April 2019): 540–49. https://doi.org/10.1016/j.ophtha.2018.09.041.Full Text Link to Item
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DuBose, Theodore B., Francesco LaRocca, Sina Farsiu, and Joseph A. Izatt. “Super-resolution retinal imaging using optically reassigned scanning laser ophthalmoscopy.” Nature Photonics 13, no. 4 (April 2019): 257–62. https://doi.org/10.1038/s41566-019-0369-7.Full Text
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Soltanian-Zadeh, Somayyeh, Kaan Sahingur, Sarah Blau, Yiyang Gong, and Sina Farsiu. “Fast and robust active neuron segmentation in two-photon calcium imaging using spatiotemporal deep learning.” Proceedings of the National Academy of Sciences of the United States of America 116, no. 17 (April 2019): 8554–63. https://doi.org/10.1073/pnas.1812995116.Full Text
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Toth, Cynthia A., Vincent Tai, Maxwell Pistilli, Stephanie J. Chiu, Katrina P. Winter, Ebenezer Daniel, Juan E. Grunwald, et al. “Distribution of OCT Features within Areas of Macular Atrophy or Scar after 2 Years of Anti-VEGF Treatment for Neovascular AMD in CATT.” Ophthalmol Retina 3, no. 4 (April 2019): 316–25. https://doi.org/10.1016/j.oret.2018.11.011.Full Text Link to Item
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Yiu, Glenn, Vivian S. Vuong, Steven Tran, Justin Migacz, David Cunefare, Sina Farsiu, Neha Khandelwal, Rupesh Agrawal, and Chui Ming Gemmy Cheung. “Vascular Response to Sildenafil Citrate in Aging and Age-Related Macular Degeneration.” Scientific Reports 9, no. 1 (March 2019): 5049. https://doi.org/10.1038/s41598-019-41509-2.Full Text
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Li, Guorong, Chanyoung Lee, Vibhuti Agrahari, Ke Wang, Iris Navarro, Joseph M. Sherwood, Karen Crews, et al. “In vivo measurement of trabecular meshwork stiffness in a corticosteroid-induced ocular hypertensive mouse model.” Proc Natl Acad Sci U S A 116, no. 5 (January 29, 2019): 1714–22. https://doi.org/10.1073/pnas.1814889116.Full Text Link to Item
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McHugh, Kevin J., Dian Li, Jay C. Wang, Leon Kwark, Jessica Loo, Venkata Macha, Sina Farsiu, Leo A. Kim, and Magali Saint-Geniez. “Computational modeling of retinal hypoxia and photoreceptor degeneration in patients with age-related macular degeneration.” Plos One 14, no. 6 (January 2019): e0216215. https://doi.org/10.1371/journal.pone.0216215.Full Text
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Patel, Monalisa, Dibyendu Mukherjee, Sina Farsiu, Breda Munoz, Arlin B. Blood, Christopher G. Wilson, and Jennifer B. Griffin. “Estimation of Gestational Age via Image Analysis of Anterior Lens Capsule Vascularity in Preterm Infants: A Pilot Study.” Frontiers in Pediatrics 7 (January 2019): 43. https://doi.org/10.3389/fped.2019.00043.Full Text
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Desai, Arjun D., Chunlei Peng, Leyuan Fang, Dibyendu Mukherjee, Andrew Yeung, Stephanie J. Jaffe, Jennifer B. Griffin, and Sina Farsiu. “Open-source, machine and deep learning-based automated algorithm for gestational age estimation through smartphone lens imaging.” Biomedical Optics Express 9, no. 12 (December 2018): 6038–52. https://doi.org/10.1364/boe.9.006038.Full Text
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Gibson, A., K. E. Piquette, U. Bergmann, W. Christens-Barry, G. Davis, M. Endrizzi, S. Fan, et al. “An assessment of multimodal imaging of subsurface text in mummy cartonnage using surrogate papyrus phantoms.” Heritage Science 6, no. 1 (December 1, 2018). https://doi.org/10.1186/s40494-018-0175-4.Full Text
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Nankivil, D., J. A. Izatt, and S. Farsiu. “Hand-held ao ophthalmoscopy enables cellular-level imaging.” Biophotonics International 25, no. 8 (November 1, 2018): 26–29.
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Soltanian-Zadeh, Somayyeh, Yiyang Gong, and Sina Farsiu. “Information-Theoretic Approach and Fundamental Limits of Resolving Two Closely Timed Neuronal Spikes in Mouse Brain Calcium Imaging.” Ieee Transactions on Bio Medical Engineering 65, no. 11 (November 2018): 2428–39. https://doi.org/10.1109/tbme.2018.2812078.Full Text
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DuBose, Theodore, Derek Nankivil, Francesco LaRocca, Gar Waterman, Kristen Hagan, James Polans, Brenton Keller, et al. “Handheld Adaptive Optics Scanning Laser Ophthalmoscope.” Optica 5, no. 9 (September 20, 2018): 1027–36. https://doi.org/10.1364/OPTICA.5.001027.Full Text Link to Item
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Dubose, Theodore B., David Cunefare, Elijah Cole, Peyman Milanfar, Joseph A. Izatt, and Sina Farsiu. “Statistical Models of Signal and Noise and Fundamental Limits of Segmentation Accuracy in Retinal Optical Coherence Tomography.” Ieee Transactions on Medical Imaging 37, no. 9 (September 2018): 1978–88. https://doi.org/10.1109/tmi.2017.2772963.Full Text
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Cunefare, David, Christopher S. Langlo, Emily J. Patterson, Sarah Blau, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Deep learning based detection of cone photoreceptors with multimodal adaptive optics scanning light ophthalmoscope images of achromatopsia.” Biomedical Optics Express 9, no. 8 (August 2018): 3740–56. https://doi.org/10.1364/boe.9.003740.Full Text
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Keller, Brenton, Mark Draelos, Gao Tang, Sina Farsiu, Anthony N. Kuo, Kris Hauser, and Joseph A. Izatt. “Real-time corneal segmentation and 3D needle tracking in intrasurgical OCT.” Biomed Opt Express 9, no. 6 (June 1, 2018): 2716–32. https://doi.org/10.1364/BOE.9.002716.Full Text Link to Item
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Loo, Jessica, Leyuan Fang, David Cunefare, Glenn J. Jaffe, and Sina Farsiu. “Deep longitudinal transfer learning-based automatic segmentation of photoreceptor ellipsoid zone defects on optical coherence tomography images of macular telangiectasia type 2.” Biomed Opt Express 9, no. 6 (June 1, 2018): 2681–98. https://doi.org/10.1364/BOE.9.002681.Full Text Link to Item
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Willoughby, Alex S., Vivian S. Vuong, David Cunefare, Sina Farsiu, Glenn Noronha, Ronald P. Danis, and Glenn Yiu. “Reply.” American Journal of Ophthalmology 189 (May 2018): 178. https://doi.org/10.1016/j.ajo.2018.03.002.Full Text
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Toth, Cynthia A., Vincent Tai, Stephanie J. Chiu, Katrina Winter, Monica B. Sevilla, Ebenezer Daniel, Juan E. Grunwald, et al. “Linking OCT, Angiographic, and Photographic Lesion Components in Neovascular Age-Related Macular Degeneration.” Ophthalmol Retina 2, no. 5 (May 2018): 481–93. https://doi.org/10.1016/j.oret.2017.09.016.Full Text Link to Item
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Yiu, Glenn, Zhe Wang, Christian Munevar, Eric Tieu, Bradley Shibata, Brittany Wong, David Cunefare, Sina Farsiu, Jeffrey Roberts, and Sara M. Thomasy. “Comparison of chorioretinal layers in rhesus macaques using spectral-domain optical coherence tomography and high-resolution histological sections.” Experimental Eye Research 168 (March 2018): 69–76. https://doi.org/10.1016/j.exer.2018.01.012.Full Text
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Patel, Tapan P., N Venkatesh Prajna, Sina Farsiu, Nita G. Valikodath, Leslie M. Niziol, Lakshey Dudeja, Kyeong Hwan Kim, and Maria A. Woodward. “Novel Image-Based Analysis for Reduction of Clinician-Dependent Variability in Measurement of the Corneal Ulcer Size.” Cornea 37, no. 3 (March 2018): 331–39. https://doi.org/10.1097/ICO.0000000000001488.Full Text Link to Item
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Willoughby, Alex S., Vivian S. Vuong, David Cunefare, Sina Farsiu, Glenn Noronha, Ronald P. Danis, and Glenn Yiu. “Choroidal Changes After Suprachoroidal Injection of Triamcinolone Acetonide in Eyes With Macular Edema Secondary to Retinal Vein Occlusion.” American Journal of Ophthalmology 186 (February 2018): 144–51. https://doi.org/10.1016/j.ajo.2017.11.020.Full Text
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Smit-McBride, Zeljka, Johnny Nguyen, Garrett W. Elliott, Zhe Wang, Ryan A. McBride, Anthony T. Nguyen, Sharon L. Oltjen, et al. “Effects of aging and environmental tobacco smoke exposure on ocular and plasma circulatory microRNAs in the Rhesus macaque.” Molecular Vision 24 (January 2018): 633–46.
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Lad, Eleonora M., Dibyendu Mukherjee, Sandra S. Stinnett, Scott W. Cousins, Guy G. Potter, James R. Burke, Sina Farsiu, and Heather E. Whitson. “Evaluation of inner retinal layers as biomarkers in mild cognitive impairment to moderate Alzheimer's disease.” Plos One 13, no. 2 (2018): e0192646. https://doi.org/10.1371/journal.pone.0192646.Full Text Link to Item
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Wong, Sophia S., Vivian S. Vuong, David Cunefare, Sina Farsiu, Ala Moshiri, and Glenn Yiu. “Macular Fluid Reduces Reproducibility of Choroidal Thickness Measurements on Enhanced Depth Optical Coherence Tomography.” American Journal of Ophthalmology 184 (December 2017): 108–14. https://doi.org/10.1016/j.ajo.2017.10.005.Full Text
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Yiu, Glenn, Eric Tieu, Christian Munevar, Brittany Wong, David Cunefare, Sina Farsiu, Laura Garzel, Jeffrey Roberts, and Sara M. Thomasy. “In Vivo Multimodal Imaging of Drusenoid Lesions in Rhesus Macaques.” Scientific Reports 7, no. 1 (November 2017): 15013. https://doi.org/10.1038/s41598-017-14715-z.Full Text
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Qian, Ruobing, Oscar M. Carrasco-Zevallos, Shwetha Mangalesh, Neeru Sarin, Lejla Vajzovic, Sina Farsiu, Joseph A. Izatt, and Cynthia A. Toth. “Characterization of Long Working Distance Optical Coherence Tomography for Imaging of Pediatric Retinal Pathology.” Transl Vis Sci Technol 6, no. 5 (October 2017): 12. https://doi.org/10.1167/tvst.6.5.12.Full Text Link to Item
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McNabb, Ryan P., James Tian, Sina Farsiu, Joseph A. Izatt, Eleonora M. Lad, and Anthony N. Kuo. “Retinal imaging in human autopsy eyes using a custom optical coherence tomography periscope.” Biomed Opt Express 8, no. 9 (September 1, 2017): 4152–59. https://doi.org/10.1364/BOE.8.004152.Full Text Link to Item
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Cunefare, David, Leyuan Fang, Robert F. Cooper, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Open source software for automatic detection of cone photoreceptors in adaptive optics ophthalmoscopy using convolutional neural networks.” Scientific Reports 7, no. 1 (July 2017): 6620. https://doi.org/10.1038/s41598-017-07103-0.Full Text
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Wang, Jingjing, Matthew L. O’Sullivan, Dibyendu Mukherjee, Vanessa M. Puñal, Sina Farsiu, and Jeremy N. Kay. “Anatomy and spatial organization of Müller glia in mouse retina.” J Comp Neurol 525, no. 8 (June 1, 2017): 1759–77. https://doi.org/10.1002/cne.24153.Full Text Link to Item
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Fang, Leyuan, David Cunefare, Chong Wang, Robyn H. Guymer, Shutao Li, and Sina Farsiu. “Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.” Biomedical Optics Express 8, no. 5 (May 2017): 2732–44. https://doi.org/10.1364/boe.8.002732.Full Text
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Mukherjee, Dibyendu, Eleonora M. Lad, Ryan R. Vann, Stephanie J. Jaffe, Traci E. Clemons, Martin Friedlander, Emily Y. Chew, Glenn J. Jaffe, Sina Farsiu, and Sina MacTel Study Group. “Correlation Between Macular Integrity Assessment and Optical Coherence Tomography Imaging of Ellipsoid Zone in Macular Telangiectasia Type 2.” Invest Ophthalmol Vis Sci 58, no. 6 (May 1, 2017): BIO291–99. https://doi.org/10.1167/iovs.17-21834.Full Text Link to Item
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Allingham, Michael J., Dibyendu Mukherjee, Erin B. Lally, Hossein Rabbani, Priyatham S. Mettu, Scott W. Cousins, and Sina Farsiu. “A Quantitative Approach to Predict Differential Effects of Anti-VEGF Treatment on Diffuse and Focal Leakage in Patients with Diabetic Macular Edema: A Pilot Study.” Transl Vis Sci Technol 6, no. 2 (March 2017): 7. https://doi.org/10.1167/tvst.6.2.7.Full Text Open Access Copy Link to Item
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Fang, Leyuan, Shutao Li, David Cunefare, and Sina Farsiu. “Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.” Ieee Transactions on Medical Imaging 36, no. 2 (February 2017): 407–21. https://doi.org/10.1109/tmi.2016.2611503.Full Text
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Willoughby, Alex S., Stephanie J. Chiu, Rachel K. Silverman, Sina Farsiu, Clare Bailey, Henry E. Wiley, Frederick L. Ferris, and Glenn J. Jaffe. “Platform-Independent Cirrus and Spectralis Thickness Measurements in Eyes with Diabetic Macular Edema Using Fully Automated Software.” Transl Vis Sci Technol 6, no. 1 (February 2017): 9. https://doi.org/10.1167/tvst.6.1.9.Full Text Link to Item
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Polans, James, David Cunefare, Eli Cole, Brenton Keller, Priyatham S. Mettu, Scott W. Cousins, Michael J. Allingham, Joseph A. Izatt, and Sina Farsiu. “Enhanced visualization of peripheral retinal vasculature with wavefront sensorless adaptive optics optical coherence tomography angiography in diabetic patients.” Opt Lett 42, no. 1 (January 1, 2017): 17–20. https://doi.org/10.1364/OL.42.000017.Full Text Link to Item
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Polans, James, Brenton Keller, Oscar M. Carrasco-Zevallos, Francesco LaRocca, Elijah Cole, Heather E. Whitson, Eleonora M. Lad, Sina Farsiu, and Joseph A. Izatt. “Wide-field retinal optical coherence tomography with wavefront sensorless adaptive optics for enhanced imaging of targeted regions.” Biomed Opt Express 8, no. 1 (January 1, 2017): 16–37. https://doi.org/10.1364/BOE.8.000016.Full Text Link to Item
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Prakalapakorn, Sasapin G., Laura A. Vickers, Rolando Estrada, Sharon F. Freedman, Carlo Tomasi, Sina Farsiu, and David K. Wallace. “Using an Image Fusion Methodology to Improve Efficiency and Traceability of Posterior Pole Vessel Analysis by ROPtool.” Open Ophthalmol J 11 (2017): 143–51. https://doi.org/10.2174/1874364101711010143.Full Text Link to Item
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Lezama, José, Dibyendu Mukherjee, Ryan P. McNabb, Guillermo Sapiro, Anthony N. Kuo, and Sina Farsiu. “Segmentation guided registration of wide field-of-view retinal optical coherence tomography volumes.” Biomed Opt Express 7, no. 12 (December 1, 2016): 4827–46. https://doi.org/10.1364/BOE.7.004827.Full Text Link to Item
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Smith, R Theodore, Sina Farsiu, and Michael Allingham. “Understanding RPE Lipofuscin.” Invest Ophthalmol Vis Sci 57, no. 15 (December 1, 2016): 6766. https://doi.org/10.1167/iovs.16-21081.Full Text Link to Item
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Veerappan, Malini, Abdul-Karim M. El-Hage-Sleiman, Vincent Tai, Stephanie J. Chiu, Katrina P. Winter, Sandra S. Stinnett, Thomas S. Hwang, et al. “Optical Coherence Tomography Reflective Drusen Substructures Predict Progression to Geographic Atrophy in Age-related Macular Degeneration.” Ophthalmology 123, no. 12 (December 2016): 2554–70. https://doi.org/10.1016/j.ophtha.2016.08.047.Full Text Link to Item
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Veerappan, Malini, Abdul-Karim M. El-Hage-Sleiman, Vincent Tai, Stephanie J. Chiu, Katrina P. Winter, Sandra S. Stinnett, Thomas S. Hwang, et al. “Optical Coherence Tomography Reflective Drusen Substructures Predict Progression to Geographic Atrophy in Age-related Macular Degeneration.” Ophthalmology 123, no. 12 (December 2016): 2554–70. https://doi.org/10.1016/j.ophtha.2016.08.047.Full Text Link to Item
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Pasricha, Neel D., Christine Shieh, Oscar M. Carrasco-Zevallos, Brenton Keller, David Cunefare, Jodhbir S. Mehta, Sina Farsiu, Joseph A. Izatt, Cynthia A. Toth, and Anthony N. Kuo. “Needle Depth and Big-Bubble Success in Deep Anterior Lamellar Keratoplasty: An Ex Vivo Microscope-Integrated OCT Study.” Cornea 35, no. 11 (November 2016): 1471–77. https://doi.org/10.1097/ICO.0000000000000948.Full Text Link to Item
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Twa, Michael D., Krystal L. Schulle, Stephanie J. Chiu, Sina Farsiu, and David A. Berntsen. “Validation of Macular Choroidal Thickness Measurements from Automated SD-OCT Image Segmentation.” Optometry and Vision Science : Official Publication of the American Academy of Optometry 93, no. 11 (November 2016): 1387–98. https://doi.org/10.1097/opx.0000000000000985.Full Text
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Yiu, Glenn, Vivian S. Vuong, Sharon Oltjen, David Cunefare, Sina Farsiu, Laura Garzel, Jeffrey Roberts, and Sara M. Thomasy. “Effect of Uveal Melanocytes on Choroidal Morphology in Rhesus Macaques and Humans on Enhanced-Depth Imaging Optical Coherence Tomography.” Investigative Ophthalmology & Visual Science 57, no. 13 (October 2016): 5764–71. https://doi.org/10.1167/iovs.16-20070.Full Text
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Li, Guorong, Dibyendu Mukherjee, Iris Navarro, Nicole E. Ashpole, Joseph M. Sherwood, Jinlong Chang, Darryl R. Overby, et al. “Visualization of conventional outflow tissue responses to netarsudil in living mouse eyes.” Eur J Pharmacol 787 (September 15, 2016): 20–31. https://doi.org/10.1016/j.ejphar.2016.04.002.Full Text Link to Item
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Vuong, Vivian S., Elad Moisseiev, David Cunefare, Sina Farsiu, Ala Moshiri, and Glenn Yiu. “Repeatability of Choroidal Thickness Measurements on Enhanced Depth Imaging Optical Coherence Tomography Using Different Posterior Boundaries.” American Journal of Ophthalmology 169 (September 2016): 104–12. https://doi.org/10.1016/j.ajo.2016.06.023.Full Text
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Carrasco-Zevallos, O. M., B. Keller, C. Viehland, L. Shen, G. Waterman, B. Todorich, C. Shieh, et al. “Live volumetric (4D) visualization and guidance of in vivo human ophthalmic surgery with intraoperative optical coherence tomography.” Sci Rep 6 (August 19, 2016): 31689. https://doi.org/10.1038/srep31689.Full Text Open Access Copy Link to Item
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Keller, Brenton, David Cunefare, Dilraj S. Grewal, Tamer H. Mahmoud, Joseph A. Izatt, and Sina Farsiu. “Length-adaptive graph search for automatic segmentation of pathological features in optical coherence tomography images.” J Biomed Opt 21, no. 7 (July 1, 2016): 76015. https://doi.org/10.1117/1.JBO.21.7.076015.Full Text Link to Item
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Kuo, Anthony N., Pavan K. Verkicharla, Ryan P. McNabb, Carol Y. Cheung, Saima Hilal, Sina Farsiu, Christopher Chen, et al. “Posterior Eye Shape Measurement With Retinal OCT Compared to MRI.” Invest Ophthalmol Vis Sci 57, no. 9 (July 1, 2016): OCT196–203. https://doi.org/10.1167/iovs.15-18886.Full Text Link to Item
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Todorich, Bozho, Christine Shieh, Philip J. DeSouza, Oscar M. Carrasco-Zevallos, David L. Cunefare, Sandra S. Stinnett, Joseph A. Izatt, et al. “Impact of Microscope-Integrated OCT on Ophthalmology Resident Performance of Anterior Segment Surgical Maneuvers in Model Eyes.” Invest Ophthalmol Vis Sci 57, no. 9 (July 1, 2016): OCT146–53. https://doi.org/10.1167/iovs.15-18818.Full Text Link to Item
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Simonett, Joseph M., Russell Huang, Nailah Siddique, Sina Farsiu, Teepu Siddique, Nicholas J. Volpe, and Amani A. Fawzi. “Macular sub-layer thinning and association with pulmonary function tests in Amyotrophic Lateral Sclerosis.” Scientific Reports 6 (July 2016): 29187. https://doi.org/10.1038/srep29187.Full Text
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Wu, Zhichao, David Cunefare, Elizabeth Chiu, Chi D. Luu, Lauren N. Ayton, Cynthia A. Toth, Sina Farsiu, and Robyn H. Guymer. “Longitudinal Associations Between Microstructural Changes and Microperimetry in the Early Stages of Age-Related Macular Degeneration.” Invest Ophthalmol Vis Sci 57, no. 8 (July 1, 2016): 3714–22. https://doi.org/10.1167/iovs.15-18294.Full Text Link to Item
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Stem, M. S., G. E. Dunbar, G. R. Jackson, S. Farsiu, R. Pop-Busui, and T. W. Gardner. “Glucose variability and inner retinal sensory neuropathy in persons with type 1 diabetes mellitus.” Eye (London, England) 30, no. 6 (June 2016): 825–32. https://doi.org/10.1038/eye.2016.48.Full Text
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Cunefare, David, Robert F. Cooper, Brian Higgins, David F. Katz, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Automatic detection of cone photoreceptors in split detector adaptive optics scanning light ophthalmoscope images.” Biomedical Optics Express 7, no. 5 (May 2016): 2036–50. https://doi.org/10.1364/boe.7.002036.Full Text
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Sevilla, Monica B., Gerald McGwin, Eleonora M. Lad, Mark Clark, Eric L. Yuan, Sina Farsiu, Christine A. Curcio, Cynthia Owsley, and Cynthia A. Toth. “Relating Retinal Morphology and Function in Aging and Early to Intermediate Age-related Macular Degeneration Subjects.” Am J Ophthalmol 165 (May 2016): 65–77. https://doi.org/10.1016/j.ajo.2016.02.021.Full Text Link to Item
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Allingham, Michael J., Qing Nie, Eleonora M. Lad, Daniel J. Izatt, Priyatham S. Mettu, Scott W. Cousins, and Sina Farsiu. “Semiautomatic Segmentation of Rim Area Focal Hyperautofluorescence Predicts Progression of Geographic Atrophy Due to Dry Age-Related Macular Degeneration.” Invest Ophthalmol Vis Sci 57, no. 4 (April 1, 2016): 2283–89. https://doi.org/10.1167/iovs.15-19008.Full Text Link to Item
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Kim, Sanghoon, Stephanie Heflin, Laura A. Kresty, Meredith Halling, Laura N. Perez, Derek Ho, Michael Crose, et al. “Analyzing spatial correlations in tissue using angle-resolved low coherence interferometry measurements guided by co-located optical coherence tomography.” Biomed Opt Express 7, no. 4 (April 1, 2016): 1400–1414. https://doi.org/10.1364/BOE.7.001400.Full Text Link to Item
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Bavinger, J Clay, Grace E. Dunbar, Maxwell S. Stem, Taylor S. Blachley, Leon Kwark, Sina Farsiu, Gregory R. Jackson, and Thomas W. Gardner. “The Effects of Diabetic Retinopathy and Pan-Retinal Photocoagulation on Photoreceptor Cell Function as Assessed by Dark Adaptometry.” Investigative Ophthalmology & Visual Science 57, no. 1 (January 2016): 208–17. https://doi.org/10.1167/iovs.15-17281.Full Text
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Knoll, Brianna, Joseph Simonett, Nicholas J. Volpe, Sina Farsiu, Mallory Ward, Alfred Rademaker, Sandra Weintraub, and Amani A. Fawzi. “Retinal nerve fiber layer thickness in amnestic mild cognitive impairment: Case-control study and meta-analysis.” Alzheimer’S & Dementia (Amsterdam, Netherlands) 4 (January 2016): 85–93. https://doi.org/10.1016/j.dadm.2016.07.004.Full Text
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LaRocca, Francesco, Derek Nankivil, Theodore DuBose, Cynthia A. Toth, Sina Farsiu, and Joseph A. Izatt. “In vivo cellular-resolution retinal imaging in infants and children using an ultracompact handheld probe.” Nat Photonics 10 (2016): 580–84. https://doi.org/10.1038/nphoton.2016.141.Full Text Link to Item
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Folgar, Francisco A., Eric L. Yuan, Monica B. Sevilla, Stephanie J. Chiu, Sina Farsiu, Emily Y. Chew, Cynthia A. Toth, and Cynthia A. Age Related Eye Disease Study 2 Ancillary Spectral-Domain Optical Coherence Tomography Study Group. “Drusen Volume and Retinal Pigment Epithelium Abnormal Thinning Volume Predict 2-Year Progression of Age-Related Macular Degeneration.” Ophthalmology 123, no. 1 (January 2016): 39-50.e1. https://doi.org/10.1016/j.ophtha.2015.09.016.Full Text Link to Item
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Estrada, Rolando, Michael J. Allingham, Priyatham S. Mettu, Scott W. Cousins, Carlo Tomasi, and Sina Farsiu. “Retinal Artery-Vein Classification via Topology Estimation.” Ieee Trans Med Imaging 34, no. 12 (December 2015): 2518–34. https://doi.org/10.1109/TMI.2015.2443117.Full Text Link to Item
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Boussommier-Calleja, Alexandra, Guorong Li, Amanda Wilson, Tal Ziskind, Oana Elena Scinteie, Nicole E. Ashpole, Joseph M. Sherwood, et al. “Physical Factors Affecting Outflow Facility Measurements in Mice.” Invest Ophthalmol Vis Sci 56, no. 13 (December 2015): 8331–39. https://doi.org/10.1167/iovs.15-17106.Full Text Link to Item
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Estrada, Rolando, Carlo Tomasi, Scott C. Schmidler, and Sina Farsiu. “Tree Topology Estimation.” Ieee Transactions on Pattern Analysis and Machine Intelligence 37, no. 8 (August 2015): 1688–1701. https://doi.org/10.1109/tpami.2014.2382116.Full Text
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Nam, Dong Heun, Philip J. Desouza, Paul Hahn, Vincent Tai, Monica B. Sevilla, Du Tran-Viet, David Cunefare, Sina Farsiu, Joseph A. Izatt, and Cynthia A. Toth. “INTRAOPERATIVE SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHY IMAGING AFTER INTERNAL LIMITING MEMBRANE PEELING IN IDIOPATHIC EPIRETINAL MEMBRANE WITH CONNECTING STRANDS.” Retina 35, no. 8 (August 2015): 1622–30. https://doi.org/10.1097/IAE.0000000000000534.Full Text Link to Item
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Hahn, Paul, Oscar Carrasco-Zevallos, David Cunefare, Justin Migacz, Sina Farsiu, Joseph A. Izatt, and Cynthia A. Toth. “Intrasurgical Human Retinal Imaging With Manual Instrument Tracking Using a Microscope-Integrated Spectral-Domain Optical Coherence Tomography Device.” Transl Vis Sci Technol 4, no. 4 (July 2015): 1. https://doi.org/10.1167/tvst.4.4.1.Full Text Link to Item
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Goldhagen, Brian E., M Tariq Bhatti, Pratul P. Srinivasan, Stephanie J. Chiu, Sina Farsiu, and Mays A. El-Dairi. “Retinal atrophy in eyes with resolved papilledema detected by optical coherence tomography.” J Neuroophthalmol 35, no. 2 (June 2015): 122–26. https://doi.org/10.1097/WNO.0000000000000210.Full Text Link to Item
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Rothman, Adam L., Monica B. Sevilla, Sharon F. Freedman, Amy Y. Tong, Vincent Tai, Du Tran-Viet, Sina Farsiu, Cynthia A. Toth, and Mays A. El-Dairi. “Assessment of retinal nerve fiber layer thickness in healthy, full-term neonates.” Am J Ophthalmol 159, no. 4 (April 2015): 803–11. https://doi.org/10.1016/j.ajo.2015.01.017.Full Text Link to Item
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Yiu, Glenn, Stephanie J. Chiu, Philip A. Petrou, Sandra Stinnett, Neeru Sarin, Sina Farsiu, Emily Y. Chew, Wai T. Wong, and Cynthia A. Toth. “Relationship of central choroidal thickness with age-related macular degeneration status.” Am J Ophthalmol 159, no. 4 (April 2015): 617–26. https://doi.org/10.1016/j.ajo.2014.12.010.Full Text Link to Item
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Chiu, Stephanie J., Michael J. Allingham, Priyatham S. Mettu, Scott W. Cousins, Joseph A. Izatt, and Sina Farsiu. “Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema.” Biomed Opt Express 6, no. 4 (April 1, 2015): 1172–94. https://doi.org/10.1364/BOE.6.001172.Full Text Link to Item
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Rabbani, Hossein, Michael J. Allingham, Priyatham S. Mettu, Scott W. Cousins, and Sina Farsiu. “Fully automatic segmentation of fluorescein leakage in subjects with diabetic macular edema.” Invest Ophthalmol Vis Sci 56, no. 3 (January 29, 2015): 1482–92. https://doi.org/10.1167/iovs.14-15457.Full Text Link to Item
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Farsiu, S., L. Fang, S. Li, X. Kang, and J. A. Izatt. “3-D Adaptive Sparsity Based Image Compression with Applications to Optical Coherence Tomography.” Ieee Transactions on Medical Imaging, (In Press), 2015.
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LaRocca, Francesco, Derek Nankivil, Sina Farsiu, and Joseph A. Izatt. “True color scanning laser ophthalmoscopy and optical coherence tomography handheld probe.” Biomedical Optics Express 5, no. 9 (September 2014): 3204–16. https://doi.org/10.1364/boe.5.003204.Full Text
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Nankivil, Derek, Al-Hafeez Dhalla, Niklas Gahm, Kevin Shia, Sina Farsiu, and Joseph A. Izatt. “Coherence revival multiplexed, buffered swept source optical coherence tomography: 400 kHz imaging with a 100 kHz source.” Optics Letters 39, no. 13 (July 2014): 3740–43. https://doi.org/10.1364/ol.39.003740.Full Text
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Li, Guorong, Sina Farsiu, Stephanie J. Chiu, Pedro Gonzalez, Elke Lütjen-Drecoll, Darryl R. Overby, and W Daniel Stamer. “Pilocarpine-induced dilation of Schlemm's canal and prevention of lumen collapse at elevated intraocular pressures in living mice visualized by OCT.” Invest Ophthalmol Vis Sci 55, no. 6 (March 4, 2014): 3737–46. https://doi.org/10.1167/iovs.13-13700.Full Text Link to Item
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Polans, James, Ryan P. McNabb, Joseph A. Izatt, and Sina Farsiu. “Compressed wavefront sensing.” Opt Lett 39, no. 5 (March 1, 2014): 1189–92. https://doi.org/10.1364/OL.39.001189.Full Text Link to Item
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Srinivasan, Pratul P., Stephanie J. Heflin, Joseph A. Izatt, Vadim Y. Arshavsky, and Sina Farsiu. “Automatic segmentation of up to ten layer boundaries in SD-OCT images of the mouse retina with and without missing layers due to pathology.” Biomed Opt Express 5, no. 2 (February 1, 2014): 348–65. https://doi.org/10.1364/BOE.5.000348.Full Text Link to Item
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Yiu, Glenn, Paula Pecen, Neeru Sarin, Stephanie J. Chiu, Sina Farsiu, Prithvi Mruthyunjaya, and Cynthia A. Toth. “Characterization of the choroid-scleral junction and suprachoroidal layer in healthy individuals on enhanced-depth imaging optical coherence tomography.” Jama Ophthalmol 132, no. 2 (February 2014): 174–81. https://doi.org/10.1001/jamaophthalmol.2013.7288.Full Text Link to Item
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Li, Guorong, Sina Farsiu, Jianming Qiu, Angela Dixon, Chunwei Song, Stuart J. McKinnon, Fan Yuan, Pedro Gonzalez, and W Daniel Stamer. “Disease progression in iridocorneal angle tissues of BMP2-induced ocular hypertensive mice with optical coherence tomography.” Mol Vis 20 (2014): 1695–1709.Link to Item
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Folgar, Francisco A., Eric L. Yuan, Sina Farsiu, and Cynthia A. Toth. “Lateral and axial measurement differences between spectral-domain optical coherence tomography systems.” J Biomed Opt 19, no. 1 (January 2014): 16014. https://doi.org/10.1117/1.JBO.19.1.016014.Full Text Link to Item
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Bowes Rickman, Catherine, Sina Farsiu, Cynthia A. Toth, and Mikael Klingeborn. “Dry age-related macular degeneration: mechanisms, therapeutic targets, and imaging.” Invest Ophthalmol Vis Sci 54, no. 14 (December 13, 2013): ORSF68–80. https://doi.org/10.1167/iovs.13-12757.Full Text Link to Item
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Lee, Joo Yong, Stephanie J. Chiu, Pratul P. Srinivasan, Joseph A. Izatt, Cynthia A. Toth, Sina Farsiu, and Glenn J. Jaffe. “Fully automatic software for retinal thickness in eyes with diabetic macular edema from images acquired by cirrus and spectralis systems.” Invest Ophthalmol Vis Sci 54, no. 12 (November 15, 2013): 7595–7602. https://doi.org/10.1167/iovs.13-11762.Full Text Link to Item
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Fang, Leyuan, Shutao Li, Ryan P. McNabb, Qing Nie, Anthony N. Kuo, Cynthia A. Toth, Joseph A. Izatt, and Sina Farsiu. “Fast acquisition and reconstruction of optical coherence tomography images via sparse representation.” Ieee Trans Med Imaging 32, no. 11 (November 2013): 2034–49. https://doi.org/10.1109/TMI.2013.2271904.Full Text Link to Item
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LaRocca, Francesco, Al-Hafeez Dhalla, Michael P. Kelly, Sina Farsiu, and Joseph A. Izatt. “Optimization of confocal scanning laser ophthalmoscope design.” Journal of Biomedical Optics 18, no. 7 (July 2013): 076015. https://doi.org/10.1117/1.jbo.18.7.076015.Full Text
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Moreno, Tomas A., Rachelle V. O’Connell, Stephanie J. Chiu, Sina Farsiu, Michelle T. Cabrera, Ramiro S. Maldonado, Du Tran-Viet, Sharon F. Freedman, David K. Wallace, and Cynthia A. Toth. “Choroid development and feasibility of choroidal imaging in the preterm and term infants utilizing SD-OCT.” Invest Ophthalmol Vis Sci 54, no. 6 (June 14, 2013): 4140–47. https://doi.org/10.1167/iovs.12-11471.Full Text Link to Item
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Chiu, Stephanie J., Yuliya Lokhnygina, Adam M. Dubis, Alfredo Dubra, Joseph Carroll, Joseph A. Izatt, and Sina Farsiu. “Automatic cone photoreceptor segmentation using graph theory and dynamic programming.” Biomed Opt Express 4, no. 6 (June 1, 2013): 924–37. https://doi.org/10.1364/BOE.4.000924.Full Text Link to Item
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Hendargo, Hansford C., Rolando Estrada, Stephanie J. Chiu, Carlo Tomasi, Sina Farsiu, and Joseph A. Izatt. “Automated non-rigid registration and mosaicing for robust imaging of distinct retinal capillary beds using speckle variance optical coherence tomography.” Biomedical Optics Express 4, no. 6 (June 2013): 803–21. https://doi.org/10.1364/boe.4.000803.Full Text
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Larocca, Francesco, Derek Nankivil, Sina Farsiu, and Joseph A. Izatt. “Handheld simultaneous scanning laser ophthalmoscopy and optical coherence tomography system.” Biomedical Optics Express 4, no. 11 (January 2013): 2307–21. https://doi.org/10.1364/boe.4.002307.Full Text
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Cabrera, Michelle T., Rachelle V. O’Connell, Cynthia A. Toth, Ramiro S. Maldonado, Du Tran-Viet, Michael J. Allingham, Stephanie J. Chiu, et al. “Macular findings in healthy full-term Hispanic newborns observed by hand-held spectral-domain optical coherence tomography.” Ophthalmic Surg Lasers Imaging Retina 44, no. 5 (2013): 448–54. https://doi.org/10.3928/23258160-20130801-01.Full Text Link to Item
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McNabb, R. P., F. LaRocca, S. Farsiu, A. N. Kuo, and J. A. Izatt. “Distributed scan SDOCT improves post refractive surgery corneal biometry.” Biomedical Optics, Biomed 2012, December 1, 2012.
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McNabb, Ryan P., Francesco Larocca, Sina Farsiu, Anthony N. Kuo, and Joseph A. Izatt. “Distributed scanning volumetric SDOCT for motion corrected corneal biometry.” Biomed Opt Express 3, no. 9 (September 1, 2012): 2050–65. https://doi.org/10.1364/BOE.3.002050.Full Text Link to Item
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Folgar, Francisco A., Jessica H. Chow, Sina Farsiu, Wai T. Wong, Stefanie G. Schuman, Rachelle V. O’Connell, Katrina P. Winter, et al. “Spatial correlation between hyperpigmentary changes on color fundus photography and hyperreflective foci on SDOCT in intermediate AMD.” Invest Ophthalmol Vis Sci 53, no. 8 (July 9, 2012): 4626–33. https://doi.org/10.1167/iovs.12-9813.Full Text Link to Item
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Yanni, Susan E., Jingyun Wang, Melody Chan, Joseph Carroll, Sina Farsiu, Joel N. Leffler, Rand Spencer, and Eileen E. Birch. “Foveal avascular zone and foveal pit formation after preterm birth.” The British Journal of Ophthalmology 96, no. 7 (July 2012): 961–66. https://doi.org/10.1136/bjophthalmol-2012-301612.Full Text
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Kuo, Anthony N., Ryan P. McNabb, Mingtao Zhao, Francesco Larocca, Sandra S. Stinnett, Sina Farsiu, and Joseph A. Izatt. “Corneal biometry from volumetric SDOCT and comparison with existing clinical modalities.” Biomed Opt Express 3, no. 6 (June 1, 2012): 1279–90. https://doi.org/10.1364/BOE.3.001279.Full Text Link to Item
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Chiu, Stephanie J., Cynthia A. Toth, Catherine Bowes Rickman, Joseph A. Izatt, and Sina Farsiu. “Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.” Biomed Opt Express 3, no. 5 (May 1, 2012): 1127–40. https://doi.org/10.1364/BOE.3.001127.Full Text Link to Item
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Fang, Leyuan, Shutao Li, Qing Nie, Joseph A. Izatt, Cynthia A. Toth, and Sina Farsiu. “Sparsity based denoising of spectral domain optical coherence tomography images.” Biomed Opt Express 3, no. 5 (May 1, 2012): 927–42. https://doi.org/10.1364/BOE.3.000927.Full Text Link to Item
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Lin, Phoebe, Priyatham S. Mettu, Dustin L. Pomerleau, Stephanie J. Chiu, Ramiro Maldonado, Sandra Stinnett, Cynthia A. Toth, Sina Farsiu, and Prithvi Mruthyunjaya. “Image inversion spectral-domain optical coherence tomography optimizes choroidal thickness and detail through improved contrast.” Invest Ophthalmol Vis Sci 53, no. 4 (April 6, 2012): 1874–82. https://doi.org/10.1167/iovs.11-9290.Full Text Link to Item
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Estrada, Rolando, Carlo Tomasi, Michelle T. Cabrera, David K. Wallace, Sharon F. Freedman, and Sina Farsiu. “Exploratory Dijkstra forest based automatic vessel segmentation: applications in video indirect ophthalmoscopy (VIO).” Biomed Opt Express 3, no. 2 (February 1, 2012): 327–39. https://doi.org/10.1364/BOE.3.000327.Full Text Link to Item
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Chiu, Stephanie J., Joseph A. Izatt, Rachelle V. O’Connell, Katrina P. Winter, Cynthia A. Toth, and Sina Farsiu. “Validated automatic segmentation of AMD pathology including drusen and geographic atrophy in SD-OCT images.” Invest Ophthalmol Vis Sci 53, no. 1 (January 5, 2012): 53–61. https://doi.org/10.1167/iovs.11-7640.Full Text Link to Item
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Cabrera, Michelle T., Ramiro S. Maldonado, Cynthia A. Toth, Rachelle V. O’Connell, Bei Bei Chen, Stephanie J. Chiu, Sina Farsiu, et al. “Subfoveal fluid in healthy full-term newborns observed by handheld spectral-domain optical coherence tomography.” Am J Ophthalmol 153, no. 1 (January 2012): 167-75.e3. https://doi.org/10.1016/j.ajo.2011.06.017.Full Text Link to Item
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Maldonado, Ramiro S., Rachelle V. O’Connell, Neeru Sarin, Sharon F. Freedman, David K. Wallace, C Michael Cotten, Katrina P. Winter, et al. “Dynamics of human foveal development after premature birth.” Ophthalmology 118, no. 12 (December 2011): 2315–25. https://doi.org/10.1016/j.ophtha.2011.05.028.Full Text Link to Item
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Ehlers, Justis P., Kendal Kernstine, Sina Farsiu, Neeru Sarin, Ramiro Maldonado, and Cynthia A. Toth. “Analysis of pars plana vitrectomy for optic pit-related maculopathy with intraoperative optical coherence tomography: a possible connection with the vitreous cavity.” Arch Ophthalmol 129, no. 11 (November 2011): 1483–86. https://doi.org/10.1001/archophthalmol.2011.316.Full Text Link to Item
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Estrada, Rolando, Carlo Tomasi, Michelle T. Cabrera, David K. Wallace, Sharon F. Freedman, and Sina Farsiu. “Enhanced video indirect ophthalmoscopy (VIO) via robust mosaicing.” Biomed Opt Express 2, no. 10 (October 1, 2011): 2871–87. https://doi.org/10.1364/BOE.2.002871.Full Text Link to Item
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Ding, Jin-Dong, Lincoln V. Johnson, Rolf Herrmann, Sina Farsiu, Stephanie G. Smith, Marybeth Groelle, Brian E. Mace, et al. “Anti-amyloid therapy protects against retinal pigmented epithelium damage and vision loss in a model of age-related macular degeneration.” Proc Natl Acad Sci U S A 108, no. 28 (July 12, 2011): E279–87. https://doi.org/10.1073/pnas.1100901108.Full Text Link to Item
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Ding, J., L Johnson R. Herrmann, S. Farsiu, S. Smith, M. Groelle, B. Mace, P. Sullivan, et al. “Anti-amyloid immunotherapy protects against RPE damage and loss of visual function in a mouse model of age-related macular degeneration.” Proceedings of the National Academy of Sciences (Pnas). 108, no. 28 (June 2011).Link to Item
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Larocca, Francesco, Stephanie J. Chiu, Ryan P. McNabb, Anthony N. Kuo, Joseph A. Izatt, and Sina Farsiu. “Robust automatic segmentation of corneal layer boundaries in SDOCT images using graph theory and dynamic programming.” Biomed Opt Express 2, no. 6 (June 1, 2011): 1524–38. https://doi.org/10.1364/BOE.2.001524.Full Text Link to Item
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Ehlers, Justis P., Yuankai K. Tao, Sina Farsiu, Ramiro Maldonado, Joseph A. Izatt, and Cynthia A. Toth. “Integration of a spectral domain optical coherence tomography system into a surgical microscope for intraoperative imaging.” Invest Ophthalmol Vis Sci 52, no. 6 (May 16, 2011): 3153–59. https://doi.org/10.1167/iovs.10-6720.Full Text Link to Item
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Reidel, Boris, J Will Thompson, Sina Farsiu, M Arthur Moseley, Nikolai P. Skiba, and Vadim Y. Arshavsky. “Proteomic profiling of a layered tissue reveals unique glycolytic specializations of photoreceptor cells.” Mol Cell Proteomics 10, no. 3 (March 2011): M110.002469. https://doi.org/10.1074/mcp.M110.002469.Full Text Link to Item
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Ehlers, Justis P., Preeya K. Gupta, Sina Farsiu, Ramiro Maldonado, Terry Kim, Cynthia A. Toth, and Prithvi Mruthyunjaya. “Evaluation of contrast agents for enhanced visualization in optical coherence tomography.” Invest Ophthalmol Vis Sci 51, no. 12 (December 2010): 6614–19. https://doi.org/10.1167/iovs.10-6195.Full Text Link to Item
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Jain, Nieraj, Sina Farsiu, Aziz A. Khanifar, Srilaxmi Bearelly, R Theodore Smith, Joseph A. Izatt, and Cynthia A. Toth. “Quantitative comparison of drusen segmented on SD-OCT versus drusen delineated on color fundus photographs.” Invest Ophthalmol Vis Sci 51, no. 10 (October 2010): 4875–83. https://doi.org/10.1167/iovs.09-4962.Full Text Link to Item
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Robinson, M Dirk, Cynthia A. Toth, Joseph Y. Lo, and Sina Farsiu. “Efficient fourier-wavelet super-resolution.” Ieee Trans Image Process 19, no. 10 (October 2010): 2669–81. https://doi.org/10.1109/TIP.2010.2050107.Full Text Link to Item
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Chiu, Stephanie J., Xiao T. Li, Peter Nicholas, Cynthia A. Toth, Joseph A. Izatt, and Sina Farsiu. “Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.” Opt Express 18, no. 18 (August 30, 2010): 19413–28. https://doi.org/10.1364/OE.18.019413.Full Text Open Access Copy Link to Item
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Tao, Yuankai K., Sina Farsiu, and Joseph A. Izatt. “Interlaced spectrally encoded confocal scanning laser ophthalmoscopy and spectral domain optical coherence tomography.” Biomedical Optics Express 1, no. 2 (August 2010): 431–40. https://doi.org/10.1364/boe.1.000431.Full Text
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Chou, N., J. A. Izatt, and S. Farsiu. “Generalized pseudo-polar fourier grids and applications in registering ophthalmic optical coherence tomography images.” Conference Record Asilomar Conference on Signals, Systems and Computers, December 1, 2009, 807–11. https://doi.org/10.1109/ACSSC.2009.5469972.Full Text
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Chavala, Sai H., Sina Farsiu, Ramiro Maldonado, David K. Wallace, Sharon F. Freedman, and Cynthia A. Toth. “Insights into advanced retinopathy of prematurity using handheld spectral domain optical coherence tomography imaging.” Ophthalmology 116, no. 12 (December 2009): 2448–56. https://doi.org/10.1016/j.ophtha.2009.06.003.Full Text Link to Item
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Wang, X., S. Farsiu, P. Milanfar, and A. Shakouri. “Power trace: An efficient method for extracting the power dissipation profile in an IC chip from its temperature map.” Ieee Transactions on Components and Packaging Technologies 32, no. 2 (August 14, 2009): 309–16. https://doi.org/10.1109/TCAPT.2009.2017204.Full Text
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Schuman, Stefanie G., Anjum F. Koreishi, Sina Farsiu, Sin-ho Jung, Joseph A. Izatt, and Cynthia A. Toth. “Photoreceptor layer thinning over drusen in eyes with age-related macular degeneration imaged in vivo with spectral-domain optical coherence tomography.” Ophthalmology 116, no. 3 (March 2009): 488-496.e2. https://doi.org/10.1016/j.ophtha.2008.10.006.Full Text Link to Item
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Scott, Adrienne W., Sina Farsiu, Laura B. Enyedi, David K. Wallace, and Cynthia A. Toth. “Imaging the infant retina with a hand-held spectral-domain optical coherence tomography device.” Am J Ophthalmol 147, no. 2 (February 2009): 364-373.e2. https://doi.org/10.1016/j.ajo.2008.08.010.Full Text Link to Item
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Robinson, D., S. Farsiu, and P. Milanfar. “Optimal registration of aliased images using variable projection with applications to super-resolution.” Computer Journal 52, no. 1 (January 1, 2009): 31–42. https://doi.org/10.1093/comjnl/bxm007.Full Text
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Chong, Gabriel T., Sina Farsiu, Sharon F. Freedman, Neeru Sarin, Anjum F. Koreishi, Joseph A. Izatt, and Cynthia A. Toth. “Abnormal foveal morphology in ocular albinism imaged with spectral-domain optical coherence tomography.” Arch Ophthalmol 127, no. 1 (January 2009): 37–44. https://doi.org/10.1001/archophthalmol.2008.550.Full Text Link to Item
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Dayani, Pouya N., Ramiro Maldonado, Sina Farsiu, and Cynthia A. Toth. “Intraoperative use of handheld spectral domain optical coherence tomography imaging in macular surgery.” Retina 29, no. 10 (2009): 1457–68. https://doi.org/10.1097/IAE.0b013e3181b266bc.Full Text Link to Item
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Takeda, H., S. Farsiu, and P. Milanfar. “Deblurring using regularized locally adaptive kernel regression.” Ieee Transactions on Image Processing : A Publication of the Ieee Signal Processing Society 17, no. 4 (April 2008): 550–63. https://doi.org/10.1109/tip.2007.918028.Full Text
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Takeda, H., S. Farsiu, and P. Milanfar. “Higher order bilateral filters and their properties.” Proceedings of Spie the International Society for Optical Engineering 6498 (August 31, 2007). https://doi.org/10.1117/12.714507.Full Text
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Wang, X., A. Shakouri, S. Farsiu, and P. Milanfar. “Extraction of power dissipation profile in an IC chip from temperature map.” Annual Ieee Semiconductor Thermal Measurement and Management Symposium, August 27, 2007, 51–56. https://doi.org/10.1109/STHERM.2007.352405.Full Text
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Farsiu, Sina, James Christofferson, Brian Eriksson, Peyman Milanfar, Benjamin Friedlander, Ali Shakouri, and Robert Nowak. “Statistical detection and imaging of objects hidden in turbid media using ballistic photons.” Applied Optics 46, no. 23 (August 2007): 5805–22. https://doi.org/10.1364/ao.46.005805.Full Text
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Takeda, Hiroyuki, Sina Farsiu, and Peyman Milanfar. “Kernel regression for image processing and reconstruction.” Ieee Transactions on Image Processing : A Publication of the Ieee Signal Processing Society 16, no. 2 (February 2007): 349–66. https://doi.org/10.1109/tip.2006.888330.Full Text
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Farsiu, S., and P. Milanfar. “Multi-scale statistical detection and ballistic imaging through turbid media.” Proceedings International Conference on Image Processing, Icip 3 (December 1, 2006). https://doi.org/10.1109/ICIP.2007.4379365.Full Text
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Takeda, H., S. Farsiu, and P. Milanfar. “Robust kernel regression for restoration and reconstruction of images from sparse noisy data.” Proceedings International Conference on Image Processing, Icip, December 1, 2006, 1257–60. https://doi.org/10.1109/ICIP.2006.312573.Full Text
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Takeda, H., S. Farsiu, and P. Milanfar. “Regularized kernel regression for image deblurring.” Conference Record Asilomar Conference on Signals, Systems and Computers, December 1, 2006, 1914–18. https://doi.org/10.1109/ACSSC.2006.355096.Full Text
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Farsiu, S., M. Elad, and P. Milanfar. “A practical approach to super-resolution.” Proceedings of Spie the International Society for Optical Engineering 6077 (May 1, 2006). https://doi.org/10.1117/12.644391.Full Text
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Farsiu, S., M. Elad, and P. Milanfar. “Video-to-video dynamic super-resolution for grayscale and color sequences.” Eurasip Journal on Applied Signal Processing 2006 (April 19, 2006). https://doi.org/10.1155/ASP/2006/61859.Full Text
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Farsiu, Sina, Michael Elad, and Peyman Milanfar. “Multiframe demosaicing and super-resolution of color images.” Ieee Transactions on Image Processing : A Publication of the Ieee Signal Processing Society 15, no. 1 (January 2006): 141–59. https://doi.org/10.1109/tip.2005.860336.Full Text
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Takeda, H., S. Farsiu, and P. Milanfar. “Image denoising by adaptive kernel regression.” Conference Record Asilomar Conference on Signals, Systems and Computers 2005 (December 1, 2005): 1660–65.
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Farsiu, S., M. Elad, and P. Milanfar. “Constrained, globally optimal, multi-frame motion estimation.” Ieee Workshop on Statistical Signal Processing Proceedings 2005 (January 1, 2005): 1396–1401. https://doi.org/10.1109/ssp.2005.1628814.Full Text
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Farsiu, S., D. Robinson, M. Elad, and P. Milanfar. “Dynamic demosaicing and color super-resolution of video sequences.” Proceedings of Spie the International Society for Optical Engineering 5562 (December 1, 2004): 169–78. https://doi.org/10.1117/12.558936.Full Text
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Farsiu, S., M. Elad, and P. Milanfar. “Multi-frame demosaicing and super-resolution from under-sampled color images.” Proceedings of Spie the International Society for Optical Engineering 5299 (December 1, 2004): 222–33. https://doi.org/10.1117/12.538372.Full Text
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Farsiu, Sina, M Dirk Robinson, Michael Elad, and Peyman Milanfar. “Fast and robust multiframe super resolution.” Ieee Transactions on Image Processing : A Publication of the Ieee Signal Processing Society 13, no. 10 (October 2004): 1327–44. https://doi.org/10.1109/tip.2004.834669.Full Text
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Farsiu, S., D. Robinson, M. Elad, and P. Milanfar. “Advances and challenges in super-resolution.” International Journal of Imaging Systems and Technology 14, no. 2 (September 27, 2004): 47–57. https://doi.org/10.1002/ima.20007.Full Text
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Farsiu, S., D. Robinson, M. Elad, and P. Milanfar. “Fast and robust super-resolution.” Ieee International Conference on Image Processing 2 (December 17, 2003): 291–94.
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Farsiu, S., D. Robinson, M. Elad, and P. Milanfar. “Robust Shift and Add Approach to Super-Resolution.” Proceedings of Spie the International Society for Optical Engineering 5203 (December 1, 2003): 121–30. https://doi.org/10.1117/12.507194.Full Text
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Rajimehr, R., S. Farsiu, L Montaser Kouhsari, A. Bidari, C. Lucas, S. Yousefian, and F. Bahrami. “Prediction of lupus nephritis in patients with systemic lupus erythematosus using artificial neural networks.” Lupus 11, no. 8 (January 2002): 485–92. https://doi.org/10.1191/0961203302lu226oa.Full Text
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Book Sections
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Robinson, M. D., S. J. Chiu, C. A. Toth, J. A. Izatt, J. Y. Lo, and S. Farsiu. “New applications of super-resolution in medical imaging.” In Super-Resolution Imaging, 383–412, 2017. https://doi.org/10.1201/9781439819319.Full Text
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Li, X. T., S. J. Chiu, P. Nicholas, C. A. Toth, J. A. Izatt, and S. Farsiu. “Segmentation of ophthalmic Optical Coherence Tomography images using graph cuts,” Vol. 7550, 2010. https://doi.org/10.1117/12.842299.Full Text
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Toth, C. A., S. Farsiu, A. Khanifar, and G. Chong. “Applications of spectral-domain OCT in AMD.” In Optical Coherence Tomography in Age-Related Macular Degeneration: OCT in AMD, 15–34, 2009. https://doi.org/10.1007/978-3-642-01467-3_3.Full Text
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Robinson, M. D., S. Farsiu, J. Y. Lo, and C. A. Toth. “Efficient restoration and enhancement of super-resolved X-ray images,” 629–32, 2008. https://doi.org/10.1109/ICIP.2008.4711833.Full Text
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Farsiu, S., S. J. Chiu, J. A. Izatt, and C. A. Toth. “Fast detection and segmentation of drusen in retinal optical coherence tomography images,” Vol. 6844, 2008. https://doi.org/10.1117/12.768624.Full Text
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Farsiu, S., D. Robinson, M. Elad, and P. Milanfar. “Simultaneous demosaicking and resolution enhancement from under-sampled image sequences.” In Single-Sensor Imaging: Methods and Applications for Digital Cameras, 503–33, 2008.
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Other Articles
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McNabb, Ryan P., Sina Farsiu, Sandra S. Stinnett, Joseph A. Izatt, and Anthony N. Kuo. “Reply.” Ophthalmology, January 2016. https://doi.org/10.1016/j.ophtha.2015.06.024.Full Text Link to Item
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Folgar, F. A., E. L. Yuan, S. Farsiu, and C. A. Toth. “Erratum: Lateral and axial measurement differences between spectral-domain optical coherence tomography systems(Journal of Biomedical Optics 19:1 016014 (2014)).” Journal of Biomedical Optics, May 1, 2015.
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Folgar, Francisco A., Eric L. Yuan, Sina Farsiu, and Cynthia A. Toth. “Errata: Lateral and axial measurement differences between spectral-domain optical coherence tomography systems.” J Biomed Opt, May 2015. https://doi.org/10.1117/1.JBO.20.5.059802.Full Text Link to Item
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Dayani, P. N., R. Maldonado, S. Farsiu, and C. A. Toth. “Erratum: Intraoperative use of handheld spectral domain optical coherence tomography imaging in macular surgery (Retina (2009) 29:10 (1457-1468)).” Retina, June 1, 2011. https://doi.org/10.1097/IAE.0b013e318221991a.Full Text
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Scott, A. W., S. Farsiu, L. B. Enyedi, D. K. Wallace, and C. A. Toth. “Reply.” American Journal of Ophthalmology, June 1, 2009. https://doi.org/10.1016/j.ajo.2009.02.007.Full Text
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Khanifar, A. A., and S. Farsiu. “Spectral-domain OCT in practice.” Retina Today, May 1, 2008.
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Robinson, M. D., S. Farsiu, J. Y. Lo, P. Milanfar, and C. A. Toth. “Efficient registration of aliased x-ray images.” Conference Record Asilomar Conference on Signals, Systems and Computers, December 1, 2007. https://doi.org/10.1109/ACSSC.2007.4487198.Full Text
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Conference Papers
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Hasan, A., K. Elkhalil, Y. Ng, J. M. Pereira, S. Farsiu, J. Blanchet, and V. Tarokh. “Modeling Extremes with d-max-decreasing Neural Networks.” In Proceedings of the 38th Conference on Uncertainty in Artificial Intelligence, Uai 2022, 759–68, 2022.
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Zhou, K. C., C. Cooke, J. Park, R. Qian, R. Horstmeyer, J. A. Izatt, and S. Farsiu. “Mesoscopic photogrammetry with an unstabilized phone camera.” In Proceedings of the Ieee Computer Society Conference on Computer Vision and Pattern Recognition, 7531–41, 2021. https://doi.org/10.1109/CVPR46437.2021.00745.Full Text
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Zhou, K. C., R. Qian, A. H. Dhalla, S. Farsiu, and J. A. Izatt. “Incoherent 3D k-space synthesis with volumetric optical coherence refraction tomography.” In Optics Infobase Conference Papers, 2021.
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Li, Guorong, Michael Lucio De Ieso, Sina Farsiu, and Daniel Stamer. “Effects of aging on conventional outflow anatomy and physiology in C57BL/6 mice.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Loo, Jessica, Traci E. Clemons, Emily Y. Chew, Martin Friedlander, Glenn J. Jaffe, and Sina Farsiu. “Beyond Performance Metrics: Automatic Deep Learning Retinal OCT Analysis Reproduces Clinical Trial Outcome.” In Ophthalmology, 127:793–801, 2020. https://doi.org/10.1016/j.ophtha.2019.12.015.Full Text
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Hagan, K., T. B. Dubose, D. Cunefare, C. Simmerer, G. Waterman, J. Park, A. N. Kuo, R. P. McNabb, J. A. Izatt, and S. Farsiu. “Wavefront sensorless multimodal handheld adaptive optics scanning laser ophthalmoscope for in vivo imaging of human retinal cones.” In Progress in Biomedical Optics and Imaging Proceedings of Spie, Vol. 11218, 2020. https://doi.org/10.1117/12.2544407.Full Text
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Hasan, Ali, João M. Pereira, Robert J. Ravier, Sina Farsiu, and Vahid Tarokh. “Learning Partial Differential Equations From Data Using Neural Networks.” In Icassp, 3962–66. IEEE, 2020.
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Soltanian-Zadeh, S., K. Kurokawa, Z. Liu, D. X. Hammer, D. T. Miller, and S. Farsiu. “Fully automatic quantification of individual ganglion cells from AO-OCT volumes via weakly supervised learning.” In Progress in Biomedical Optics and Imaging Proceedings of Spie, Vol. 11218, 2020. https://doi.org/10.1117/12.2543964.Full Text
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Zhou, K. C., R. Qian, S. Farsiu, and J. A. Izatt. “Resolution enhancement and speckle reduction in coherence imaging: A k-space model of optical coherence refraction tomography (OCRT).” In Optics Infobase Conference Papers, Vol. Part F180-OCT-2020, 2020.
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Dhalla, Al-Hafeez, Jongwan Park, Christian Viehland, Sina Farsiu, Anthony N. Kuo, and Joseph A. Izatt. “Low-cost, portable color confocal scanning laser ophthalmoscope for remote screening and telemedicine applications.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Ethier, C Ross, Guorong Li, Chanyoung Lee, A Thomas Read, Ke Wang, Iris D. Navarro, Jenny Cui, et al. “Netarsudil (NT) restores trabecular meshwork (TM) function/stiffness and reduces IOP in steroid-induced ocular hypertension (OHT).” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Farsiu, Sina, Jessica Loo, Jacque L. Duncan, David G. Birch, and Glenn J. Jaffe. “Deep learning-based automatic segmentation of intact ellipsoid zone area on optical coherence tomography images of USH2A-related retinal degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Hasan, Ali, Zengtian Deng, Jessica Loo, Dibyendu Mukherjee, Jacque L. Duncan, David G. Birch, Glenn J. Jaffe, and Sina Farsiu. “Meta-learning approach to automatically register multivendor retinal images.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Li, Guorong, Michael Lucio De Ieso, Sina Farsiu, and Daniel Stamer. “Effects of aging on conventional outflow anatomy and physiology in C57BL/6 mice.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Loo, Jessica, Cindy Xinji Cai, Emily Chew, Martin Friedlander, Glenn J. Jaffe, and Sina Farsiu. “Deep learning-based automatic segmentation of retinal cavitations on OCT images of MacTel2.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Onal, Sumru, Jessica Loo, Victor L Perez Quinones, Nguyen Tan, Madhu Cherukury, Sina Farsiu, and Glenn J. Jaffe. “In-vivo quantitative analysis of pterygium volume using anterior segment optical coherence tomography imaging.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Soltanian-Zadeh, Somayyeh, Zhuolin Liu, Ricardo Villanueva, Osamah Saeedi, Kazuhiro Kurokawa, Hae Won Jung, Donald Thomas Miller, Daniel Hammer, and Sina Farsiu. “Automatic cellular level differentiation of glaucomatous and healthy eyes via deep learning-based adaptive optics OCT analysis.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Song, Ailin, Alice Liu, Guorong Li, Liwen Li, Sina Farsiu, Dan Stamer, Stamer Victor L. Perez, Ryan P. McNabb, and Anthony N. Kuo. “Mouse corneal transplant evaluation with topography and pachymetry using OCT.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.Link to Item
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Huang, O., W. Long, N. Bottenus, G. E. Trahey, S. Farsiu, and M. L. Palmeri. “MimickNet, Matching Clinical Post-Processing under Realistic Black-Box Constraints.” In Ieee International Ultrasonics Symposium, Ius, 2019-October:1145–51, 2019. https://doi.org/10.1109/ULTSYM.2019.8925597.Full Text
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Berntsen, David A., Anita T. Gostovic, Hope M. Queener, Moriah A. Chandler, Juan Huang, Alex D. Nixon, Loraine T. Sinnott, et al. “Choroidal Thickness in Myopic Children in the BLINK Study.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Cunefare, David, Alison L. Huckenpahler, Emily J. Patterson, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Deep learning multimodal detection and classification of cone and rod photoreceptors in adaptive optics scanning light ophthalmoscope images.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Ethier, C Ross, Guorong Li, Chanyoung Lee, Ke Wang, Iris D. Navarro, Joseph M. Sherwood, Karen Crews, Sina Farsiu, Cheng-Wen Lin, and W Daniel Stamer. “In vivo measurement of TM stiffness: proof-of-principle in mice.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Farsiu, Sina, Jessica Loo, Matthias Frank Kriegel, Megan Tuohy, Venkatesh Prajna, and Maria A. Woodward. “Deep learning-based automatic segmentation of stromal infiltrates and associated biomarkers on slit-lamp images of microbial keratitis.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Hagan, Kristen, Theodore DuBose, Ruobing Qian, Jongwan Park, Ryan P. McNabb, Joseph A. Izatt, and Sina Farsiu. “Design and fabrication of the first handheld multimodal adaptive optics scanning laser ophthalmoscope.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Kriegel, Matthias Frank, Jessica Loo, Venkatesh Prajna, Sina Farsiu, Megan Tuohy, Preethi Mohana Gompa, Leslie Niziol, and Maria A. Woodward. “Reliability of physicians' measurements when manually annotating images of microbial keratitis.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Loo, Jessica, Traci E. Clemons, Emily Y. Chew, Martin Friedlander, Glenn J. Jaffe, and Sina Farsiu. “Automatic Deep Learning OCT Analysis Algorithm Reliably Reproduces Expert-Evaluated Outcome of a Randomized Clinical Trial for Macular Telangiectasia Type 2 Treatment.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Yeung, Andrew Ho-Fai, Divya Subramanian, Arjun Divyang Desai, Somayyeh Soltanian-Zadeh, Arup Roy, Lejla Vajzovic, Marc Sommer, and Sina Farsiu. “Spatio-temporal image modulation for enhancing the quality of vision with potential application in patients with retinal prostheses.” In Investigative Ophthalmology & Visual Science, Vol. 60. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2019.Link to Item
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Chew, Emily Y., Traci E. Clemons, Glenn J. Jaffe, Sina Farsiu, Eleonora Lad, and Martin Friedlander. “Phase 2 Trial of Ciliary Neurotrophic Factor for Macular Telangiectasia Type 2.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Clemons, Traci E., Emily Y. Chew, Eleonora M. Lad, Glenn J. Jaffe, Sina Farsiu, Sarah Duwel, David Cunefare, and Dibyendu Mukherji. “Longitudinal Structure/Function Correlation Between Microperimetry and OCT Imaging in Type 2 Macular Telangiectasia (MacTel).” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Cunefare, David, Emily J. Patterson, Sarah Blau, Christopher S. Langlo, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Convolutional neural network based detection of cones in multimodal adaptive optics scanning light ophthalmoscope images of achromatopsia.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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DeSouza, Philip, Scott Walter, David Cunefare, Rajiv Shah, Sina Farsiu, and Glenn J. Jaffe. “Semi-Automated Segmentation of Hyperreflective Foci on Optical Coherence Tomography.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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DuBose, Theodore, Derek Nankivil, Francesco LaRocca, Kristen Hagan, Gar Waterman, Tran-Viet Du, Anthony N. Kuo, Cynthia A. Toth, Joseph A. Izatt, and Sina Farsiu. “Handheld Adaptive Optics Scanning Laser Ophthalmoscope for in vivo Photoreceptor Imaging of Supine Adults and Neonates.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Keller, Brenton, Mark Draelos, Gao Tang, Sina Farsiu, Anthony N. Kuo, Kris Hauser, and Joseph A. Izatt. “Real- time Corneal Segmentation and 3D Needle Tracking in Intrasurgical OCT.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Li, Guorong, Vibhuti Agrahari, Iris Navarro, Sina Farsiu, Ashim K. Mitra, and W Daniel Stamer. “Pentablock Copolymer Dexamethasone Nanoformulations Induced Ocular Hypertension in Mice.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Loo, Jessica, Leyuan Fang, David Cunefare, Glenn J. Jaffe, and Sina Farsiu. “Deep learning-based automatic segmentation of ellipsoid zone defects in optical coherence tomography images of macular telangiectasia type 2.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Mukkamala, Lekha, Parisa Emami-Naeini, Sophia Wong, David Cunefare, Sina Farsiu, Lawrence S. Morse, Ala Moshiri, Susanna S. Park, and Glenn Yiu. “Dynamic Anatomic Changes During Epiretinal Membrane Peeling Surgery Measured Using Intraoperative OCT.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Willoughby, Alex, Vivian Vuong, David Cunefare, Sina Farsiu, Glenn Noronha, Ronald P. Danis, and Glenn Yiu. “Choroidal Changes after Suprachoroidal Injection of CLS-TA, Triamcinolone Acetonide Injectable Suspension, in Eyes with Macular Edema Secondary to Retinal Vein Occlusion.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Woertz, Erica N., Bisola Omoba, Stephanie J. Chiu, Sina Farsiu, and Joseph Carroll. “Assessing ganglion cell layer topography in human albinism using optical coherence tomography.” In Investigative Ophthalmology & Visual Science, Vol. 59. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2018.Link to Item
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Toth, M. B., C. A. Toth, W. Christens-Barry, S. Farsiu, G. Li Duke, A. Gibson, and M. Terras. “Integrating optical imaging of mummy mask cartonnage.” In Is and T Archiving Conference, Archiving 2018, 2018-April:157–62, 2018.
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Sleiman, Karim, Malini Veerappan, Katrina P. Winter, Michelle N. McCall, Glenn Yiu, Sina Farsiu, Emily Y. Chew, Traci Clemons, Cynthia A. Toth, and Cynthia A. Age-Related Eye Disease Study 2 Ancillary Spectral Domain Optical Coherence Tomography Study Group. “Optical Coherence Tomography Predictors of Risk for Progression to Non-Neovascular Atrophic Age-Related Macular Degeneration.” In Ophthalmology, 124:1764–77, 2017. https://doi.org/10.1016/j.ophtha.2017.06.032.Full Text Link to Item
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Cunefare, David, Christopher S. Langlo, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Automatic detection of cones in multi-modal adaptive optics scanning light ophthalmoscope images of achromatopsia.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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DuBose, Theodore, Francesco LaRocca, Sina Farsiu, and Joseph A. Izatt. “Optical photon reassignment super-resolution scanning laser ophthalmoscopy.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Fang, Leyuan, Chong Wang, David Cunefare, Robyn H. Guymer, and Sina Farsiu. “Automatic segmentation of nine layer boundaries in OCT images using convolutional neural networks and graph search.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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LaRocca, Francesco, Derek Nankivil, Gar Waterman, Theodore DuBose, James Polans, Brenton Keller, Anthony N. Kuo, Joseph A. Izatt, and Sina Farsiu. “Handheld Adaptive Optics Scanning Laser Ophthalmoscope for in vivo Imaging of Cone Photoreceptors.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Tai, Vincent, Stephanie Chiu, Katrina Winter, Ebenezer Daniel, Juan E. Grunwald, Maxwell Pistilli, Monica Sevilla, et al. “Linking optical coherence tomographic, angiographic and photographic lesion components in neovascular age-related macular degeneration in the Comparison of Age-related Macular Degeneration Treatments Trials.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Toth, Cynthia A., Vincent Tai, Maxwell Pistilli, Stephanie Chiu, Katrina Winter, Ebenezer Daniel, Juan E. Grunwald, et al. “Distribution of optical coherence tomographic morphologic components within areas appearing as atrophic or scarred after two years of anti-VEGF treatment for neovascular age-related macular degeneration in the Comparison of Age-related Macular Degeneration Treatments Trials.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Vuong, Vivian S., Steven Tran, Justin V. Migacz, Iwona Gorczynska, David Cunefare, Sina Farsiu, and Glenn Yiu. “Effect of Sildenafil Citrate on Choroidal Thickness in Age-Related Macular Degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Yiu, Glenn, Christian Munevar, Eric Tieu, Brittany M. Wong, David Cunefare, Sina Farsiu, Laura Garzel, Jeffrey Roberts, and Sara M. Thomasy. “Multimodal Imaging of Drusenoid Lesions in Rhesus Macaques.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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LaRocca, Francesco, Theodore B. DuBose, Sina Farsiu, and Joseph A. Izatt. “Optical photon reassignment super-resolved scanning laser ophthalmoscopy (Conference Presentation).” In Ophthalmic Technologies Xxvii, edited by Fabrice Manns, Per G. Söderberg, and Arthur Ho. SPIE, 2017. https://doi.org/10.1117/12.2252384.Full Text
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Allingham, Michael J., Dibyendu Mukherjee, Erin Lally, Hossein Rabbani, Priyatham S. Mettu, Scott W. Cousins, and Sina Farsiu. “A quantitative approach to predict differential effects of anti-VEGF treatment on diffuse and focal leakage in patients with diabetic macular edema.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Ashpole, Nicole E., Dibyendu Mukherjee, Guorong Li, Paolo Maccarini, Joseph M. Sherwood, C Ross Ethier, Darryl R. Overby, Sina Farsiu, and W Daniel Stamer. “IOP-induced Changes in Schlemm's Canal Dimensions and the Relation to Shear Stress.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Cunefare, David, Robert F. Cooper, Brian P. Higgins, Alfredo Dubra, Joseph Carroll, and Sina Farsiu. “Automated Detection of Cone Photoreceptors in Split Detector Adaptive Optics Scanning Light Ophthalmoscope Images.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Davila, Jose, Clay Bavinger, Grace E. Dunbar, Maxwell Stem, Leon Kwark, Sina Farsiu, and Thomas W. Gardner. “Effects of panretinal photocoagulation on macular structure and function in patients with proliferative diabetic retinopathy.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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DuBose, Theodore B., Peyman Milanfar, Joseph A. Izatt, and Sina Farsiu. “Fundamental Bounds on Accuracy of Human Retinal SDOCT Image Segmentation based on Retinal Layer-Specific Noise Models.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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LaRocca, Francesco, Derek Nankivil, Theodore Dubose, Cynthia A. Toth, Sina Farsiu, and Joseph A. Izatt. “Parafoveal cone photoreceptor imaging in infants and young children using an ultra-compact SLO/OCT handheld probe.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Lad, Eleonora M., Dibyendu Mukherjee, Ryan R. Vann, Traci E. Clemons, Emily Y. Chew, Glenn J. Jaffe, and Sina Farsiu. “Novel software to assess correlation between MAIA microperimetry and OCT imaging of ellipsoid zone in type 2 idiopathic macular telangiectasia.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Li, Guorong, Dibyendu Mukherjee, Iris Navarro, Sina Farsiu, Pedro Gonzalez, Casey Kopczynski, and W Daniel Stamer. “Real-time Visualization of AR-13324 Effects on Schlemm's Canal and Scleral Vessels in Living Mice.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Mukherjee, Dibyendu, Guorong Li, W Daniel Stamer, and Sina Farsiu. “Segmentation and analysis software for mapping aqueous humor outflow pattern in living mice.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Polans, James, Francesco LaRocca, Oscar Carrasco-Zevallos, Brenton Keller, Eleonora M. Lad, Heather Whitson, Anthony N. Kuo, Sina Farsiu, and Joseph A. Izatt. “Wide-Field Sensorless Adaptive Optics Optical Coherence Tomography for Enhanced Visualization of the Retinal Periphery.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Vuong, Vivian, Elad Moisselev, David Cunefare, Sina Farsiu, Ala Moshiri, and Glenn Yiu. “Repeatability of choroidal thickness measurements on Enhanced Depth Imaging OCT using different posterior boundaries.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Walter, Scott, Dilraj Singh Grewal, David Cunefare, Paramjit K. Bhullar, Sina Farsiu, and Tamer H. Mahmoud. “Topography of the Vitreoretinal Interface in Vitreomacular Traction Syndrome.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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Whitson, Heather, Sina Farsiu, Sandra S. Stinnett, Leon Kwark, Guy Potter, James Burke, Scott W. Cousins, and Eleonora M. Lad. “Retinal Biomarkers of Alzheimer's Disease.” In Investigative Ophthalmology & Visual Science, Vol. 57. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2016.Link to Item
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DuBose, Theodore B., Peyman Milanfar, Joseph A. Izatt, and Sina Farsiu. “Optical coherence tomography noise modeling and fundamental bounds on human retinal layer segmentation accuracy (Conference Presentation).” In Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine Xx, edited by Joseph A. Izatt, James G. Fujimoto, and Valery V. Tuchin. SPIE, 2016. https://doi.org/10.1117/12.2214777.Full Text
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Hu, Fangyao, Robert Morhard, Heather Liu, Helen Murphy, Sina Farsiu, and Nimmi Ramanujam. “Label-free vascular imaging in a spontaneous hamster cheek pouch carcinogen model for pre-cancer detection (Conference Presentation).” In Optical Biopsy Xiv: Toward Real Time Spectroscopic Imaging and Diagnosis, edited by Robert R. Alfano and Stavros G. Demos. SPIE, 2016. https://doi.org/10.1117/12.2213782.Full Text
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Viehland, Christian, Brenton Keller, Oscar Carrasco-Zevallos, David Cunefare, Liangbo Shen, Cynthia Toth, Sina Farsiu, and Joseph A. Izatt. “Novel real-time volumetric tool segmentation algorithm for intraoperative microscope integrated OCT (Conference Presentation).” In Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine Xx, edited by Joseph A. Izatt, James G. Fujimoto, and Valery V. Tuchin. SPIE, 2016. https://doi.org/10.1117/12.2214591.Full Text
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Allingham, Michael J., Daniel Izatt, Qing Nie, Eleonora M. Lad, Priyatham S. Mettu, Scott W. Cousins, and Sina Farsiu. “Robust, easy-to-use, semiautomated software quantifies lesion rim area hyperautofluorescence and predicts progression of geographic atrophy.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Chandramohan, Arthika, Jonathan P. Wright, Xuan Duong Fernandez, Jie Zhuang, Leon Kwark, Sina Farsiu, Scott W. Cousins, David Madden, Eleonora M. Lad, and Heather E. Whitson. “Relationships between Retinal Nerve Fiber Layer and Brain Changes in Age-Related Macular Degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Gunther, Randall C., Cynthia A. Toth, Malini Veerappan, Michelle Michelson, Vincent Tai, Katrina Winter, Francisco A. Folgar, Emily Y. Chew, and Sina Farsiu. “Association of drusen substructure findings on SD-OCT with abnormal drusen volumes and progression to choroidal neovascularization in the AREDS2 Ancillary Study.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Lad, Eleonora M., Scott W. Cousins, Sina Farsiu, and Alan D. Proia. “Retinal Macrophages in Stages of Age-related Macular Degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Rothman, Adam, Monica Bernadette Sevilla, Mays El-Dairi, Joshua Shimony, Kathyrn Gustafson, Carolyn Pizoli, Amy Tong, Sina Farsiu, Sharon Freedman, and Cynthia A. Toth. “Very Preterm Neonatal Retinal Nerve Fiber Layer Thickness is a Biomarker of Brain Anatomy and Neurodevelopmental Health.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Sevilla, Monica Bernadette, Gerald McGwin, Eleonora Lad, Mark E. Clark, Eric Yuan, Sina Farsiu, Christine A. Curcio, Cynthia Owsley, and Cynthia A. Toth. “Relating retinal morphology on spectral domain optical coherence tomography (SDOCT) to macular function in aging and early to intermediate age-related macular degeneration (AMD).” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Simonett, Joseph, Russell Huang, Nailah Siddique, Sina Farsiu, Teepu Siddique, Nicholas J. Volpe, and Amani A. Fawzi. “Retinal Structural Changes in Amyotrophic Lateral Sclerosis (ALS).” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Tai, Vincent, Monica Bernadette Sevilla, Traci E. Clemons, Emily Y. Chew, Frederick L. Ferris, Sina Farsiu, and Cynthia A. Toth. “Comparing retinal sensitivity and SDOCT volumes in the AMD Phenotype and Genotype study.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Yiu, Glenn, Stephanie J. Chiu, Philip A. Petrou, Sandra Stinnett, Neeru Sarin, Sina Farsiu, Emily Y. Chew, Wai T. Wong, and Cynthia A. Toth. “Relationship of Central Choroidal Thickness with Age-Related Macular Degeneration Status.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Bozho-Todorich, Leslie J., Christine Shieh, Philip DeSouza, Oscar Carrasco-Zevallos, David Cunefare, Joseph A. Izatt, Sina Farsiu, Prithvi Mruthyunjaya, Anthony N. Kuo, and Cynthia A. Toth. “Impact of Microscope Integrated OCT on ophthalmology resident performance of anterior segment maneuvers in model eyes.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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Whitson, Heather E., Sina Farsiu, Sandra Stinnett, Sung Lee, Leon Kwark, Guy Potter, James Burke, Scott W. Cousins, and Eleonora Lad. “Retinal imaging biomarkers for early diagnosis of Alzheimer's disease.” In Investigative Ophthalmology & Visual Science, Vol. 56. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2015.Link to Item
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LaRocca, Francesco, Derek Nankivil, Theodore DuBose, Sina Farsiu, and Joseph A. Izatt. “Ultra-compact switchable SLO/OCT handheld probe design.” In Spie Proceedings, edited by Fabrice Manns, Per G. Söderberg, and Arthur Ho. SPIE, 2015. https://doi.org/10.1117/12.2077754.Full Text
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Folgar, Francisco A., Monica B. Sevilla, Vincent Tai, Traci E. Clemons, Ronald P. Danis, Emily Y. Chew, Sina Farsiu, and Cynthia A. Toth. “Comparison of standardized color photography grading and SDOCT volume analysis to predict 2-year progression from intermediate to advanced age-related macular degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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LaRocca, Francesco, Derek Nankivil, Sina Farsiu, and Joseph A. Izatt. “Handheld Simultaneous True Color SLO-OCT System.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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Li, Guorong, Pedro Gonzalez, Sina Farsiu, and W Daniel Stamer. “Dynamic alterations in conventional outflow function in Bmp2-induced ocular hypertensive mice.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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McHugh, Kevin, Leon Kwark, Sina Farsiu, Leo A. Kim, and Magali Saint-Geniez. “Patient-specific modeling of retinal oxygen as a predictor of AMD progression.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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Polans, James, Ryan P. McNabb, Joseph A. Izatt, and Sina Farsiu. “Compressed Wavefront Aberrometry of the Human Eye.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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Sevilla, Monica B., Francisco A. Folgar, Vincent Tai, Traci E. Clemons, Ronald P. Danis, Emily Y. Chew, Sina Farsiu, and Cynthia A. Toth. “Comparison of standardized color photography grading and SDOCT volume analysis in intermediate age-related macular degeneration to predict 2-year visual acuity outcomes.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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Tai, Vincent, Francisco A. Folgar, Monica B. Sevilla, Traci E. Clemons, Ronald P. Danis, Emily Y. Chew, Sina Farsiu, and Cynthia A. Toth. “Comparison of standardized color photography grading and SDOCT volume analysis for quantitative assessment of drusen and geographic atrophy in intermediate age-related macular degeneration.” In Investigative Ophthalmology & Visual Science, Vol. 55. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2014.Link to Item
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Arshavsky, Alec, Francesco LaRocca, Joseph Izatt, Anthony Kuo, and Sina Farsiu. “Automatic Segmentation of Corneal Lamellar Graft Surfaces from Low-Contrast Optical Coherence Tomography Images.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Chiu, Stephanie, Adam Dubis, Alfredo Dubra, Joseph Carroll, Joseph Izatt, and Sina Farsiu. “Automatic Segmentation of Photoreceptors in AOSLO Images Using Graph Theory and Dynamic Programming.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Dubis, Adam, Francisco Folgar, Eric Yuan, Sina Farsiu, and Cynthia Toth. “Comparison of retinal measurements by spectral-domain optical coherence tomography systems using a model eye.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Hendargo, Hansford, Rolando Estrada, Stephanie Chiu, Carlo Tomasi, Sina Farsiu, and Joseph Izatt. “Image Registration for Motion Artifact Removal in Retinal Vascular Imaging Using Speckle Variance Fourier Domain Optical Coherence Tomography.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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LaRocca, Francesco, Derek Nankivil, Al-Hafeez Dhalla, Ryan McNabb, Cynthia Toth, Sina Farsiu, and Joseph Izatt. “Handheld Combined SLO/OCT System.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Manjunath, Varsha, Glenn Yiu, Stephanie Chiu, Sandra Stinnett, Sina Farsiu, and Tamer Mahmoud. “Effect of Focal Laser and anti-VEGF Therapy on Choroidal Thickness in Diabetic Macular Edema as measured by Enhanced-Depth Imaging Optical Coherence Tomography.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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McNabb, Ryan, Sina Farsiu, Sandra Stinnett, Joseph Izatt, and Anthony Kuo. “Measured Corneal Power and Astigmatism After LASIK with Spectral Domain Optical Coherence Tomography (SDOCT) Reflects Change in Manifest Refraction.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Stem, Maxwell, Munira Hussain, Melody Chan, Stephanie Chiu, Pratul Srinivasan, Jeffrey Sundstrom, Thomas Gardner, Sina Farsiu, Rodica Pop-Busui, and Roni Shtein. “Structural changes in the retina and cornea during diabetic neuropathy.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Vajzovic, Lejla, Adam Dubis, Rachelle O’Connell, Tomas Moreno, Stephanie Chiu, Sharon Freedman, Sina Farsiu, and Cynthia Toth. “Retinal Photoreceptor Development and Maturation in Preterm and Term Infants.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Yiu, Glenn, Sharon Fekrat, Neeru Sarin, Stephanie Chiu, Sandra Stinnett, Sina Farsiu, and Cynthia Toth. “Choroidal Thickne in Age-Related Macular Degeneration as measured by Semi-Automated Segmentation of the Choroid in Enhanced-Depth Imaging Optical Coherence Tomography.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Yuan, Eric, Francisco Folgar, Stephanie Chiu, Sina Farsiu, and Cynthia Toth. “One-year macular volume change of the neurosensory retina in intermediate AMD by SDOCT semi-automated segmentation.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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McNabb, R. P., F. LaRocca, S. Farsiu, A. N. Kuo, and J. A. Izatt. “Distributed scan SDOCT improves post refractive surgery corneal biometry.” In Digital Holography and Three Dimensional Imaging, Dh 2012, 2012.
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Bearelly, S., S. Raghunath, A. A. Khanifar, S. W. Cousins, and S. Farsiu. “Quantitative Evaluation of Fundus Autofluorescence Images to Predict Geographic Atrophy Progression.” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Chiu, S. J., X. Li, P. Nicholas, C. A. Toth, J. A. Izatt, and S. Farsiu. “Automated Segmentation of Seven Retinal Layers in SDOCT Congruent With Expert Manual Segmentation.” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Estrada, R., C. Tomasi, D. K. Wallace, S. F. Freedman, and S. Farsiu. “Software-Based Method for Acquiring Enhanced, Panoramic Images From Video Indirect Ophthalmoscopy for Evaluation of Retinopathy of Prematurity (ROP).” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Kuo, A. N., M. Zhao, S. Farsiu, and J. A. Izatt. “SDOCT Measurement of Corneal Power and Comparision With Standard Techniques.” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Maldonado, R. S., R. Vosburg, N. Sarin, D. K. Wallace, S. F. Freedman, S. Farsiu, and C. A. Toth. “Foveal Morphological Characteristics in Preterm Neonates Without Severe Retinopathy of Prematurity (ROP) Observed With Spectral Domain Optical Coherence Tomography (SD OCT).” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Robinson, M Dirk, Sina Farsiu, Joseph Y. Lo, and Cynthia A. Toth. “Efficient Restoration and Enhancement of Super-resolved X-ray Images.” In 2008 Ieee International Conference on Image Processing, Proceedings, 633-+. IEEE, 2008.Link to Item
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Farsiu, Sina, and Peyman Milanfar. “Multi-scale statistical detection and ballistic imaging through turbid media.” In 2007 Ieee International Conference on Image Processing, Vols 1 7, 1665-+. IEEE, 2007.Link to Item
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- Teaching & Mentoring
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Recent Courses
- BME 494: Projects in Biomedical Engineering (GE) 2023
- BME 544: Digital Image Processing (GE, IM) 2023
- BME 789: Internship in Biomedical Engineering 2023
- BME 791: Graduate Independent Study 2023
- ECE 899: Special Readings in Electrical Engineering 2023
- BME 493: Projects in Biomedical Engineering (GE) 2022
- BME 544: Digital Image Processing (GE, IM) 2022
- BME 789: Internship in Biomedical Engineering 2022
- BME 494: Projects in Biomedical Engineering (GE) 2021
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Advising & Mentoring
- I am proud of the students that have collaborated with me at the Vision and Image Processing Laboratory and their outstanding scientific achievements. My most recent PhD graduate, Stephanie J. Chiu, co-authored over 20 journal papers during her tenure in my lab. My most recent Pratt Fellow undergraduate student, Pratul P. Srinivasan, published four journal papers including two first-authored papers during his tenure in my lab.
- Scholarly, Clinical, & Service Activities
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Outreach & Engaged Scholarship
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