Piotr E. Marszalek | Scholars@Duke

Piotr E. Marszalek
Professor of Mechanical Engineering and Materials Science

My research focuses on investigating relationships between structural and mechanical properties of biopolymers (polysaccharides, DNA, proteins), which I study at a single molecule level. My main approaches are experimental scanning probe microscopy techniques and computational methods involving Molecular Dynamics simulations and ab initio quantum mechanical calculations. The ultimate goal of this research is to understand the above-mentioned relationships at an atomic level and to apply the knowledge gained towards elucidating basic phenomena such as: molecular recognition that mediates interactions between proteins and sugars, mechanotransduction that underlies mechanical sensing and hearing in all organisms, and protein folding that is fundamental to all biology. Our DNA research is aimed at exploiting atomic force microscopy techniques to develop new ultra-sensitive assays for detecting and examining DNA damage, the process underlying carcinogenesis, and to increase our mechanistic understanding of DNA damage and repair processes. This research, in addition to its basic science aspects will lay a foundation for the future use of AFM technologies in the nanoscale DNA diagnostics with a potential to directly benefit human health.

Current Research Interests

Investigating relationships between structural and mechanical properties of biopolymers (polysaccharides, DNA, proteins), at a single molecule level.

Current Appointments & Affiliations

Professor of Mechanical Engineering and Materials Science, Thomas Lord Department of Mechanical Engineering and Materials Science, Pratt School of Engineering 2009

Contact Information

3387 Fciemas Building, Box 90300, Durham, NC 27708
3387 Fciemas Building, Box 90300, Durham, NC 27708-0300
pemar@duke.edu (919) 660-5381
Marszalek Lab

Background
Education, Training, & Certifications
- Ph.D., Electrotechnical Institute (Poland) 1991
- M.S., University of Warsaw (Poland) 1985
Previous Appointments & Affiliations
- Director of Graduate Studies in the Department of Mechanical Engineering and Materials Science, Thomas Lord Department of Mechanical Engineering and Materials Science, Pratt School of Engineering 2015 - 2017
- Professor of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2012 - 2016
- Associate Professor of Mechanical Engineering and Materials Science, Thomas Lord Department of Mechanical Engineering and Materials Science, Pratt School of Engineering 2007 - 2009
- Associate Professor of Mechanical Engineering and Materials Science, Thomas Lord Department of Mechanical Engineering and Materials Science, Pratt School of Engineering 2002 - 2007
Recognition
In the News
- JAN 17, 2020 Pratt School of Engineering
  
  Learning How Molecules Function by Stretching and Tearing Them Apart
- AUG 10, 2016
  
  Slowly Pulling Proteins Apart Reveals Unexpected Path to Stability
Research
Selected Grants
- University Training Program in Biomolecular and Tissue Engineering awarded by National Institutes of Health 1994 - 2027
- Transition to Excellence: From Single-Molecule Force Spectroscopy to Single-Particle Cryogenic Electron Microscopy awarded by National Science Foundation 2021 - 2024
- EAGER: Exploring the Quantum-Mechanical Basis of Odorant Detection by Olfactory Receptors awarded by National Science Foundation 2021 - 2024
- Acquisition of a VRS1250 Video-Rate Imaging Module for a Shared-Use Asylum-Cypher Atomic Force Microscope (AFM) awarded by North Carolina Biotechnology Center 2023 - 2024
- LUMICKS C-TRAP awarded by National Institutes of Health 2022 - 2023
- Molecular Mechanisms of Spontaneous and Hsp70-assisted Renaturation of Misfolded Proteins awarded by National Science Foundation 2018 - 2022
- Progress and Prospects of Single Molecule Force Spectroscopy in Biological and Chemical Sciences Conference awarded by National Science Foundation 2019 - 2020
- Refolding of Mechanically Perturbed Proteins via All-Atom Molecular Dynamics Simulations-Sigma Xi award to David Wang awarded by Sigma Xi 2018 - 2019
- Vectorial Folding of Large, Multidomain Proteins awarded by National Science Foundation 2015 - 2018
- Investigating DNA Mismatch Repair with Single-Molecule Techniques awarded by National Science Foundation 2005 - 2017
- Forces and Long-Distance Coupling along DNA in the Mismatch Repair (MMR) Pathway awarded by National Institutes of Health 2014 - 2016
- Structural Biology and Biophysics Training Program awarded by National Institutes of Health 1994 - 2015
- Design and Implementation of Genetically Encoded Myosin Based Force Sensors awarded by National Institutes of Health 2012 - 2015
- Vectorial Folding of Protiens and Nascent Polypeptide Chains by AFM and Computer Simulations awarded by National Science Foundation 2011 - 2014
- Nanomechanics of Spiral Proteins awarded by National Institutes of Health 2008 - 2013
- Chemo-mechanical Nano-scale Mechanisms of Aging awarded by National Science Foundation 2007 - 2012
- Conformations of Polysaccharides and Nucleic Acids by Single Molecule Force Spectroscopy awarded by National Science Foundation 2007 - 2011
- Training in Biomolecular and Tissue Engineering awarded by National Institutes of Health 2003 - 2009
- Nanoscale DNA Diagnostics by Single Molecule AFM awarded by National Institutes of Health 2004 - 2008
- Construction of a High-Precision, Low Cost Atomic Force Microscope by Undergraduate Students for Undergraduate Research awarded by Lord Foundation of North Carolina 2006 - 2007
- Force-induced Conformational Transitions in Single Polysaccharide Molecules by AFM awarded by National Science Foundation 2002 - 2007
External Relationships
- Tune Therapeutics
Publications & Artistic Works
Selected Publications
- Academic Articles
  - Apostolidou, Dimitra, Pan Zhang, Weitao Yang, and Piotr E. Marszalek. “Mechanical Unfolding and Refolding of NanoLuc via Single-Molecule Force Spectroscopy and Computer Simulations.” Biomacromolecules 23, no. 12 (December 2022): 5164–78. https://doi.org/10.1021/acs.biomac.2c00997.
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  - Marszalek, Piotr E. “Capturing intrinsic nanomechanics of allostery.” Biophysical Journal 121, no. 23 (December 2022): 4415–16. https://doi.org/10.1016/j.bpj.2022.10.037.
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  - Li, Qing, Dimitra Apostolidou, and Piotr E. Marszalek. “Reconstruction of mechanical unfolding and refolding pathways of proteins with atomic force spectroscopy and computer simulations.” Methods (San Diego, Calif.) 197 (January 2022): 39–53. https://doi.org/10.1016/j.ymeth.2021.05.012.
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  - Zhang, Pan, David Wang, Weitao Yang, and Piotr E. Marszalek. “Piecewise All-Atom SMD Simulations Reveal Key Secondary Structures in Luciferase Unfolding Pathway.” Biophysical Journal 119, no. 11 (December 2020): 2251–61. https://doi.org/10.1016/j.bpj.2020.10.023.
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  - Ding, Yue, Dimitra Apostolidou, and Piotr Marszalek. “Mechanical Stability of a Small, Highly-Luminescent Engineered Protein NanoLuc.” International Journal of Molecular Sciences 22, no. 1 (December 2020): E55. https://doi.org/10.3390/ijms22010055.
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  - Marszalek, Piotr E., and Andres F. Oberhauser. “Meeting report - NSF-sponsored workshop 'Progress and Prospects of Single-Molecule Force Spectroscopy in Biological and Chemical Sciences'.” Journal of Cell Science 133, no. 16 (August 2020): jcs251421. https://doi.org/10.1242/jcs.251421.
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  - Wang, David, and Piotr E. Marszalek. “Exploiting a Mechanical Perturbation of a Titin Domain to Identify How Force Field Parameterization Affects Protein Refolding Pathways.” Journal of Chemical Theory and Computation 16, no. 5 (May 2020): 3240–52. https://doi.org/10.1021/acs.jctc.0c00080.
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  - Endow, Sharyn A., and Piotr E. Marszalek. “An estimate to the first approximation of microtubule rupture force.” Eur Biophys J 48, no. 6 (September 2019): 569–77. https://doi.org/10.1007/s00249-019-01371-6.
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  - Scholl, Zackary N., Qing Li, Eric Josephs, Dimitra Apostolidou, and Piotr E. Marszalek. “Force Spectroscopy of Single Protein Molecules Using an Atomic Force Microscope.” Journal of Visualized Experiments : Jove, no. 144 (February 2019). https://doi.org/10.3791/55989.
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  - Scholl, Zackary N., Eric A. Josephs, and Piotr E. Marszalek. “Correction to "Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy".” Biomacromolecules 20, no. 1 (January 2019): 567. https://doi.org/10.1021/acs.biomac.8b01703.
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  - Josephs, Eric A., and Piotr E. Marszalek. “Endonuclease-independent DNA mismatch repair processes on the lagging strand.” Dna Repair 68 (August 2018): 41–49. https://doi.org/10.1016/j.dnarep.2018.06.002.
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  - Li, Qing, Zackary N. Scholl, and Piotr E. Marszalek. “Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase.” Biophysical Journal 115, no. 1 (July 2018): 46–58. https://doi.org/10.1016/j.bpj.2018.05.028.
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  - Plata, Carlos A., Zackary N. Scholl, Piotr E. Marszalek, and Antonio Prados. “Relevance of the Speed and Direction of Pulling in Simple Modular Proteins.” Journal of Chemical Theory and Computation 14, no. 6 (June 2018): 2910–18. https://doi.org/10.1021/acs.jctc.8b00347.
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  - Gimsa, Jan, Philipp Wysotzki, Šarka Perutkova, Thomas Weihe, Patrick Elter, Piotr Marszałek, Veronika Kralj-Iglič, Torsten Müller, and Aleš Iglič. “Spermidine-Induced Attraction of Like-Charged Surfaces Is Correlated with the pH-Dependent Spermidine Charge: Force Spectroscopy Characterization.” Langmuir : The Acs Journal of Surfaces and Colloids 34, no. 8 (February 2018): 2725–33. https://doi.org/10.1021/acs.langmuir.7b04199.
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  - Marszalek, Piotr E. “Warhammers for Peaceful Times.” Biophysical Journal 114, no. 1 (January 2018): 1–2. https://doi.org/10.1016/j.bpj.2017.10.043.
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  - Scholl, Zackary N., and Piotr E. Marszalek. “AFM-Based Single-Molecule Force Spectroscopy of Proteins.” Methods in Molecular Biology (Clifton, N.J.) 1814 (January 2018): 35–47. https://doi.org/10.1007/978-1-4939-8591-3_3.
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  - Josephs, Eric A., and Piotr E. Marszalek. “A 'Semi-Protected Oligonucleotide Recombination' Assay for DNA Mismatch Repair in vivo Suggests Different Modes of Repair for Lagging Strand Mismatches.” Nucleic Acids Research 45, no. 8 (May 2017): e63. https://doi.org/10.1093/nar/gkw1339.
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  - Scholl, Zackary N., Weitao Yang, and Piotr E. Marszalek. “Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase.” Biophysical Journal 112, no. 9 (May 2017): 1829–40. https://doi.org/10.1016/j.bpj.2017.03.028.
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  - Gonzalez, Mark A., Joseph R. Simon, Ali Ghoorchian, Zachary Scholl, Shaoting Lin, Michael Rubinstein, Piotr Marszalek, Ashutosh Chilkoti, Gabriel P. López, and Xuanhe Zhao. “Strong, Tough, Stretchable, and Self-Adhesive Hydrogels from Intrinsically Unstructured Proteins.” Advanced Materials, 2017. https://doi.org/10.1002/adma.201604743.
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  - Benedetti, Fabrizio, Yulia Gazizova, Andrzej J. Kulik, Piotr E. Marszalek, Dmitry V. Klinov, Giovanni Dietler, and Sergey K. Sekatskii. “Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?” Biophysical Journal 111, no. 6 (September 2016): 1163–72. https://doi.org/10.1016/j.bpj.2016.08.018.
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  - Scholl, Zackary N., Qing Li, Weitao Yang, and Piotr E. Marszalek. “Single-molecule Force Spectroscopy Reveals the Calcium Dependence of the Alternative Conformations in the Native State of a βγ-Crystallin Protein.” The Journal of Biological Chemistry 291, no. 35 (August 2016): 18263–75. https://doi.org/10.1074/jbc.m116.729525.
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  - Scholl, Zackary N., Eric A. Josephs, and Piotr E. Marszalek. “Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy.” Biomacromolecules 17, no. 7 (July 2016): 2502–5. https://doi.org/10.1021/acs.biomac.6b00548.
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  - Josephs, Eric A., D Dewran Kocak, Christopher J. Fitzgibbon, Joshua McMenemy, Charles A. Gersbach, and Piotr E. Marszalek. “Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.” Nucleic Acids Research 44, no. 5 (March 2016): 2474. https://doi.org/10.1093/nar/gkv1293.
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  - Josephs, Eric A., Tianli Zheng, and Piotr E. Marszalek. “Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair.” Dna Repair 35 (November 2015): 71–84. https://doi.org/10.1016/j.dnarep.2015.08.006.
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  - Josephs, Eric A., D Dewran Kocak, Christopher J. Fitzgibbon, Joshua McMenemy, Charles A. Gersbach, and Piotr E. Marszalek. “Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.” Nucleic Acids Research 43, no. 18 (October 2015): 8924–41. https://doi.org/10.1093/nar/gkv892.
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  - Scholl, Zackary N., Weitao Yang, and Piotr E. Marszalek. “Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization.” Acs Nano 9, no. 2 (February 2015): 1189–97. https://doi.org/10.1021/nn504686f.
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  - Scholl, Z. N., W. Yang, and P. E. Marszalek. “Erratum: Chaperones rescue luciferase folding by separating its domains (Journal of Biological Chemistry (2014) 289 (28607-28618) DOI: 10.1074/jbc.A114.582049).” Journal of Biological Chemistry 290, no. 2 (January 9, 2015): 883. https://doi.org/10.1074/jbc.A114.582049.
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  - Jagusiak, A., L. Konieczny, M. Krol, P. Marszalek, B. Piekarska, P. Piwowar, I. Roterman, J. Rybarska, B. Stopa, and G. Zemanek. “Intramolecular immunological signal hypothesis revived--structural background of signalling revealed by using Congo Red as a specific tool.” Mini Reviews in Medicinal Chemistry 14, no. 13 (January 2015): 1104–13. https://doi.org/10.2174/1389557514666141127150803.
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  - Li, Qing, Zackary N. Scholl, and Piotr E. Marszalek. “Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes.” Angewandte Chemie (International Ed. in English) 53, no. 49 (December 2014): 13429–33. https://doi.org/10.1002/anie.201407211.
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  - Scholl, Zackary N., Weitao Yang, and Piotr E. Marszalek. “Chaperones rescue luciferase folding by separating its domains.” The Journal of Biological Chemistry 289, no. 41 (October 2014): 28607–18. https://doi.org/10.1074/jbc.m114.582049.
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  - Scholl, Zackary N., and Piotr E. Marszalek. “Unraveling the mysteries of chaperone interactions of the myosin head.” Biophysical Journal 107, no. 3 (August 2014): 541–42. https://doi.org/10.1016/j.bpj.2014.06.020.
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  - Scholl, Zackary N., Qing Li, and Piotr E. Marszalek. “Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars.” Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology 6, no. 3 (May 2014): 211–29. https://doi.org/10.1002/wnan.1253.
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  - Scholl, Zackary N., and Piotr E. Marszalek. “Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions.” Ultramicroscopy 136 (January 2014): 7–14. https://doi.org/10.1016/j.ultramic.2013.07.020.
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  - Scholl, Z. N., M. Rabbi, D. Lee, L. Manson, H. S-Gracz, and P. E. Marszalek. “Origin of overstretching transitions in single-stranded nucleic acids.” Physical Review Letters 111, no. 18 (November 1, 2013): 188302.
  - Scholl, Zackary N., Mahir Rabbi, David Lee, Laura Manson, Hanna S-Gracz, and Piotr E. Marszalek. “Origin of overstretching transitions in single-stranded nucleic acids.” Physical Review Letters 111, no. 18 (November 2013): 188302. https://doi.org/10.1103/physrevlett.111.188302.
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  - Dendzik, Maciej, Andrzej Kulik, Fabrizio Benedetti, Piotr E. Marszalek, and Giovanni Dietler. “A single-molecule stretching method for lateral and normal AFM lever calibration.” Nanotechnology 24, no. 36 (September 2013): 365703. https://doi.org/10.1088/0957-4484/24/36/365703.
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  - Settanni, Giovanni, David Serquera, Piotr E. Marszalek, Emanuele Paci, and Laura S. Itzhaki. “Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin.” Plos Computational Biology 9, no. 1 (January 2013): e1002864. https://doi.org/10.1371/journal.pcbi.1002864.
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  - Loksztejn, Anna, Zackary Scholl, and Piotr E. Marszalek. “Atomic force microscopy captures folded ribosome bound nascent chains.” Chemical Communications (Cambridge, England) 48, no. 96 (December 2012): 11727–29. https://doi.org/10.1039/c2cc35551e.
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  - Lee, W., J. Strümpfer, V. Bennett, K. Schulten, and P. E. Marszalek. “Erratum: Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats (Journal of Biological Chemistry (2012) 287, (19115-19121) DOI: 10.1074/jbc.A112.365569).” Journal of Biological Chemistry 287, no. 42 (October 12, 2012): 35539. https://doi.org/10.1074/jbc.A112.365569.
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  - Lee, Whasil, Johan Strümpfer, Vann Bennett, Klaus Schulten, and Piotr E. Marszalek. “Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats.” J Biol Chem 287, no. 23 (June 1, 2012): 19115–21. https://doi.org/10.1074/jbc.M112.365569.
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  - Marszalek, Piotr E., and Yves F. Dufrêne. “Stretching single polysaccharides and proteins using atomic force microscopy.” Chemical Society Reviews 41, no. 9 (May 2012): 3523–34. https://doi.org/10.1039/c2cs15329g.
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  - Callahan, Daniel J., Wenge Liu, Xinghai Li, Matthew R. Dreher, Wafa Hassouneh, Minkyu Kim, Piotr Marszalek, and Ashutosh Chilkoti. “Triple stimulus-responsive polypeptide nanoparticles that enhance intratumoral spatial distribution.” Nano Letters 12, no. 4 (April 2012): 2165–70. https://doi.org/10.1021/nl300630c.
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  - Lee, Whasil, Xiancheng Zeng, Kristina Rotolo, Ming Yang, Christopher J. Schofield, Vann Bennett, Weitao Yang, and Piotr E. Marszalek. “Mechanical anisotropy of ankyrin repeats.” Biophys J 102, no. 5 (March 7, 2012): 1118–26. https://doi.org/10.1016/j.bpj.2012.01.046.
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  - Kim, Minkyu, Chien-Chung Wang, Fabrizio Benedetti, and Piotr E. Marszalek. “A nanoscale force probe for gauging intermolecular interactions.” Angewandte Chemie (International Ed. in English) 51, no. 8 (February 2012): 1903–6. https://doi.org/10.1002/anie.201107210.
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  - Kim, Minkyu, Chien-Chung Wang, Fabrizio Benedetti, Mahir Rabbi, Vann Bennett, and Piotr E. Marszalek. “Nanomechanics of streptavidin hubs for molecular materials.” Adv Mater 23, no. 47 (December 15, 2011): 5684–88. https://doi.org/10.1002/adma.201103316.
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  - Jiang, Yong, and Piotr E. Marszalek. “Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair.” The Embo Journal 30, no. 14 (June 2011): 2881–93. https://doi.org/10.1038/emboj.2011.180.
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  - Wang, C. C., T. Y. Tsong, Y. H. Hsu, and P. E. Marszalek. “Erratum: Inhibitor binding increases the mechanical stability of staphylococcal nuclease (Biophysical Journal (2011) 104 (1094-1099)).” Biophysical Journal 100, no. 6 (March 16, 2011): 1596. https://doi.org/10.1016/j.bpj.2011.03.001.
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  - Lee, W., X. Zeng, H. X. Zhou, V. Bennett, W. Yang, and P. E. Marszalek. “Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.” Journal of Biological Chemistry 286, no. 10 (March 11, 2011): 8708. https://doi.org/10.1074/jbc.A110.179697.
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  - Wang, Chien-Chung, Tian-Yow Tsong, Yau-Heiu Hsu, and Piotr E. Marszalek. “Inhibitor binding increases the mechanical stability of staphylococcal nuclease.” Biophysical Journal 100, no. 4 (February 2011): 1094–99. https://doi.org/10.1016/j.bpj.2011.01.011.
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  - Lee, Whasil, Xiancheng Zeng, Huan-Xiang Zhou, Vann Bennett, Weitao Yang, and Piotr E. Marszalek. “Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.” J Biol Chem 285, no. 49 (December 3, 2010): 38167–72. https://doi.org/10.1074/jbc.M110.179697.
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  - Marszalek, Piotr E. “DNA sequencing: detecting methylation with force.” Nature Nanotechnology 5, no. 11 (November 2010): 765–66. https://doi.org/10.1038/nnano.2010.223.
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  - Jiang, Yong, Mahir Rabbi, Piotr A. Mieczkowski, and Piotr E. Marszalek. “Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis.” The Journal of Physical Chemistry. B 114, no. 37 (September 2010): 12162–65. https://doi.org/10.1021/jp105603k.
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  - Kim, Minkyu, Khadar Abdi, Gwangrog Lee, Mahir Rabbi, Whasil Lee, Ming Yang, Christopher J. Schofield, Vann Bennett, and Piotr E. Marszalek. “Fast and forceful refolding of stretched alpha-helical solenoid proteins.” Biophys J 98, no. 12 (June 16, 2010): 3086–92. https://doi.org/10.1016/j.bpj.2010.02.054.
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  - Serquera, David, Whasil Lee, Giovanni Settanni, Piotr E. Marszalek, Emanuele Paci, and Laura S. Itzhaki. “Mechanical unfolding of an ankyrin repeat protein.” Biophysical Journal 98, no. 7 (April 2010): 1294–1301. https://doi.org/10.1016/j.bpj.2009.12.4287.
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  - Zeng, Xiancheng, Hao Hu, Huan-Xiang Zhou, Piotr E. Marszalek, and Weitao Yang. “Equilibrium sampling for biomolecules under mechanical tension.” Biophysical Journal 98, no. 4 (February 2010): 733–40. https://doi.org/10.1016/j.bpj.2009.11.004.
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  - Glowacki, Mariusz, Karol Budohoski, Piotr Marszalek, Jerzy Walecki, and Zbigniew Czernicki. “A non-invasive assessment of intracranial volume reserve by measuring cerebrospinal fluid volume with the aid of CT imaging.” Acta Neurochirurgica. Supplement 106 (January 2010): 199–202. https://doi.org/10.1007/978-3-211-98811-4_37.
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  - Lee, Gwangrog, Garrett G. Muramoto, John P. Chute, and Piotr E. Marszalek. “Nanomechanical fingerprints of gamma radiation damage to DNA.” Journal of Nanoscience and Nanotechnology 9, no. 12 (December 2009): 7359–63. https://doi.org/10.1166/jnn.2009.1776.
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  - Rivera, M., W. Lee, P. E. Marszalek, D. G. Cole, and R. L. Clark. “Aligning molecular attachment sites in single molecule force spectroscopy measurements.” 2008 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc 2008 4 (November 23, 2009): 663–67.
  - Janke, Matthias, Yuliya Rudzevich, Olena Molokanova, Thorsten Metzroth, Ingo Mey, Gregor Diezemann, Piotr E. Marszalek, Jürgen Gauss, Volker Böhmer, and Andreas Janshoff. “Mechanically interlocked calix[4]arene dimers display reversible bond breakage under force.” Nature Nanotechnology 4, no. 4 (April 2009): 225–29. https://doi.org/10.1038/nnano.2008.416.
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  - Ke, Changhong, Anna Loksztejn, Yong Jiang, Minkyu Kim, Michael Humeniuk, Mahir Rabbi, and Piotr E. Marszalek. “Detecting solvent-driven transitions of poly(A) to double-stranded conformations by atomic force microscopy.” Biophysical Journal 96, no. 7 (April 2009): 2918–25. https://doi.org/10.1016/j.bpj.2008.12.3939.
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  - Jiang, Yong, Mahir Rabbi, Minkyu Kim, Changhong Ke, Whasil Lee, Robert L. Clark, Piotr A. Mieczkowski, and Piotr E. Marszalek. “UVA generates pyrimidine dimers in DNA directly.” Biophysical Journal 96, no. 3 (February 2009): 1151–58. https://doi.org/10.1016/j.bpj.2008.10.030.
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  - Rivera, M., W. Lee, P. E. Marszalek, D. G. Cole, and R. L. Clark. “Aligning molecular attachment sites in single molecule force spectroscopy measurements.” Proceedings of the Asme Design Engineering Technical Conference 4 (December 1, 2008): 663–67. https://doi.org/10.1115/DETC2008-50019.
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  - Rivera, Monica, Whasil Lee, Changhong Ke, Piotr E. Marszalek, Daniel G. Cole, and Robert L. Clark. “Minimizing pulling geometry errors in atomic force microscope single molecule force spectroscopy.” Biophysical Journal 95, no. 8 (October 2008): 3991–98. https://doi.org/10.1529/biophysj.108.138842.
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  - Rivera, M., C. Ke, P. E. Marszalek, D. G. Cole, and R. L. Clark. “A method to correct pulling geometry induced errors in single molecule force spectroscopy measurements.” 2007 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc2007 3 PART B (June 13, 2008): 801–7. https://doi.org/10.1115/DETC2007-35430.
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  - Ke, Changhong, Yong Jiang, Piotr A. Mieczkowski, Garrett G. Muramoto, John P. Chute, and Piotr E. Marszalek. “Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy.” Small (Weinheim an Der Bergstrasse, Germany) 4, no. 2 (February 2008): 288–94. https://doi.org/10.1002/smll.200700527.
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  - Jiang, Yong, Changhong Ke, Piotr A. Mieczkowski, and Piotr E. Marszalek. “Detecting ultraviolet damage in single DNA molecules by atomic force microscopy.” Biophysical Journal 93, no. 5 (September 2007): 1758–67. https://doi.org/10.1529/biophysj.107.108209.
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  - Ke, Changhong, Michael Humeniuk, Hanna S-Gracz, and Piotr E. Marszalek. “Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy.” Physical Review Letters 99, no. 1 (July 2007): 018302. https://doi.org/10.1103/physrevlett.99.018302.
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  - Ke, Changhong, Yong Jiang, Monica Rivera, Robert L. Clark, and Piotr E. Marszalek. “Pulling geometry-induced errors in single molecule force spectroscopy measurements.” Biophysical Journal 92, no. 9 (May 2007): L76–78. https://doi.org/10.1529/biophysj.107.104901.
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  - Lee, Gwangrog, Mahir Rabbi, Robert L. Clark, and Piotr E. Marszalek. “Nanomechanical fingerprints of UV damage to DNA.” Small (Weinheim an Der Bergstrasse, Germany) 3, no. 5 (May 2007): 809–13. https://doi.org/10.1002/smll.200600592.
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  - Snyder, Phillip W., Gwangrog Lee, Piotr E. Marszalek, Robert L. Clark, and Eric J. Toone. “A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities.” Proceedings of the National Academy of Sciences of the United States of America 104, no. 8 (February 2007): 2579–84. https://doi.org/10.1073/pnas.0606604104.
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  - Ke, Changhong, Yong Jiang, Garrett G. Muramoto, John P. Chute, and Piotr E. Marszalek. “Direct detection of gamma radiation-induced DNA damage at a single molecule level by AFM.” Biophysical Journal, January 1, 2007, 165A-165A.
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  - Lee, Gwangrog, Whasil Lee, and Piotr E. Marszalek. “Nanomechanics of alginate molecules by single molecule force spectroscopy.” Biophysical Journal, January 1, 2007, 657A-657A.
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  - Lee, G. R., K. Abdi, V. Bennett, and P. E. Marszalek. “The mechanical behavior of beta-catenin captured by an atomic force microscopy.” Biophysical Journal, 2007, 659A-659A.
  - Lu, Zhenyu, Hao Hu, Weitao Yang, and Piotr E. Marszalek. “Simulating force-induced conformational transitions in polysaccharides with the SMD replica exchange method.” Biophysical Journal 91, no. 6 (September 2006): L57–59. https://doi.org/10.1529/biophysj.106.090324.
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  - Zhang, Qingmin, Zhenyu Lu, Hao Hu, Weitao Yang, and Piotr E. Marszalek. “Direct detection of the formation of V-amylose helix by single molecule force spectroscopy.” Journal of the American Chemical Society 128, no. 29 (July 2006): 9387–93. https://doi.org/10.1021/ja057693+.
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  - Zhang, Qingmin, and Piotr E. Marszalek. “Identification of sugar isomers by single-molecule force spectroscopy.” Journal of the American Chemical Society 128, no. 17 (May 2006): 5596–97. https://doi.org/10.1021/ja058828e.
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  - Lee, Gwangrog, Khadar Abdi, Yong Jiang, Peter Michaely, Vann Bennett, and Piotr E. Marszalek. “Nanospring behaviour of ankyrin repeats.” Nature 440, no. 7081 (March 9, 2006): 246–49. https://doi.org/10.1038/nature04437.
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  - Zhang, Q. M., and P. E. Marszalek. “Solvent effects on the elasticity of polysaccharide molecules in disordered and ordered states by single-molecule force spectroscopy.” Polymer 47, no. 7 (2006): 2526–32.
  - Cieplak, M., and P. E. Marszalek. “Mechanical unfolding of ubiquitin molecules.” The Journal of Chemical Physics 123, no. 19 (November 15, 2005): 194903.
  - Cieplak, Marek, and Piotr E. Marszalek. “Mechanical unfolding of ubiquitin molecules.” The Journal of Chemical Physics 123, no. 19 (November 2005): 194903. https://doi.org/10.1063/1.2046609.
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  - Dzwolak, Wojciech, and Piotr E. Marszalek. “Zipper-like properties of [poly(L-lysine)+ poly(L-glutamic acid)]beta-pleated molecular self-assembly.” Chemical Communications (Cambridge, England), no. 44 (November 2005): 5557–59. https://doi.org/10.1039/b510150f.
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  - Zhang, Qingmin, Justyna Jaroniec, Gwangrog Lee, and Piotr E. Marszalek. “Direct detection of inter-residue hydrogen bonds in polysaccharides by single-molecule force spectroscopy.” Angewandte Chemie (International Ed. in English) 44, no. 18 (April 2005): 2723–27. https://doi.org/10.1002/anie.200462067.
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  - Jaroniec, J., and P. E. Marszalek. “A quantum mechanical study of forced conformational transitions in sugar rings.” Biophysical Journal 88, no. 1 (January 1, 2005): 169A-169A.
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  - Jarus-Dziedzic, K., J. Jurkiewicz, Z. Czernicki, E. Fersten, M. Głowacki, P. Marszałek, W. Zabołotny, and P. Karłowicz. “Transcranial Doppler (TCD) ultrasonography in patients with ventriculomegaly: Investigation of additional parameters for qualifying shunt implantation.” Polish Journal of Radiology 70, no. 1 (January 1, 2005): 27–34.
  - Lee, G., and P. E. Marszalek. “UV radiation affects the mechanics of the double helix.” Biophysical Journal 88, no. 1 (January 1, 2005): 348A-348A.
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  - Zhang, Q. M., J. Jaroniec, G. R. Lee, and P. E. Marszalek. “Direct detection of inter-residue hydrogen bonds in polysaccharides by single molecule force spectroscopy.” Biophysical Journal 88, no. 1 (January 1, 2005): 170A-170A.
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  - Zhang, Q. M., G. R. Lee, and P. E. Marszalek. “Atomic cranks and levers control sugar ring conformations.” Journal of Physics Condensed Matter 17, no. 18 (2005): S1427–42.
  - Zhang, Q. M., J. Jaronic, G. Lee, and P. Marszalek. “Detection of inter-residue hydrogen bonds in polysaccharides by AFM.” Abstracts of Papers of the American Chemical Society 229 (2005): U788–U788.
  - Lee, Gwangrog, Wiesław Nowak, Justyna Jaroniec, Qingmin Zhang, and Piotr E. Marszalek. “Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides.” Biophysical Journal 87, no. 3 (September 2004): 1456–65. https://doi.org/10.1529/biophysj.104.042879.
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  - Zhang, Q. M., J. Jaroniec, G. Lee, and P. E. Marszalek. “Amylose elasticity depends on the solvent dielectric constant.” Abstracts of Papers of the American Chemical Society 228 (August 22, 2004): U487–U487.
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  - Lu, Zhenyu, Wieslaw Nowak, Gwangrog Lee, Piotr E. Marszalek, and Weitao Yang. “Elastic properties of single amylose chains in water: a quantum mechanical and AFM study.” Journal of the American Chemical Society 126, no. 29 (July 2004): 9033–41. https://doi.org/10.1021/ja031940x.
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  - Lee, Gwangrog, Wiesław Nowak, Justyna Jaroniec, Qingmin Zhang, and Piotr E. Marszalek. “Nanomechanical control of glucopyranose rotamers.” Journal of the American Chemical Society 126, no. 20 (May 2004): 6218–19. https://doi.org/10.1021/ja0491984.
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  - Kersey, Farrell R., Gwangrog Lee, Piotr Marszalek, and Stephen L. Craig. “Surface-to-surface bridges formed by reversibly assembled polymers.” Journal of the American Chemical Society 126, no. 10 (March 2004): 3038–39. https://doi.org/10.1021/ja0499501.
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  - Lee, G., W. Nowak, and P. E. Marszalek. “Mechanics of 1,6 linked polysaccharides by AFM and SMD calculations.” Biophysical Journal 86, no. 1 (January 1, 2004): 322A-322A.
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  - Lee, G., W. Nowak, J. Jaroniec, Q. M. Zhang, and P. Marszalek. “Force-induced conformational transitions in 1,6-linked polysaccharides.” Abstracts of Papers of the American Chemical Society 228 (2004): U225–U225.
  - Marszalek, Piotr E., Andres F. Oberhauser, Hongbin Li, and Julio M. Fernandez. “The force-driven conformations of heparin studied with single molecule force microscopy.” Biophysical Journal 85, no. 4 (October 2003): 2696–2704. https://doi.org/10.1016/s0006-3495(03)74692-x.
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  - Carrion-Vazquez, Mariano, Hongbin Li, Hui Lu, Piotr E. Marszalek, Andres F. Oberhauser, and Julio M. Fernandez. “The mechanical stability of ubiquitin is linkage dependent.” Nature Structural Biology 10, no. 9 (September 2003): 738–43. https://doi.org/10.1038/nsb965.
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  - Vazquez, M. C., H. B. Li, H. Lu, P. E. Marszalek, A. F. Oberhauser, and J. M. Fernandez. “Linkage-dependent stability in polyubiquitin chains.” Biophysical Journal 84, no. 2 (February 1, 2003): 491A-492A.
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  - Li, H. B., M. Carrion Vazquez, A. F. Oberhauser, P. Marszalek, and J. M. Fernandez. “Stretching single molecules into novel conformations using the atomic force microscope.” Abstracts of Papers of the American Chemical Society 225 (2003): U685–U685.
  - Nowak, W., G. Lee, and P. Marszalek. “Mechanics of the glucopyranose ring by single molecule atomic force microscopy, quantum chemistry and molecular dynamics simulations.” Abstracts of Papers of the American Chemical Society 226 (2003): U214–U214.
  - Li, Hongbin, Wolfgang A. Linke, Andres F. Oberhauser, Mariano Carrion-Vazquez, Jason G. Kerkvliet, Hui Lu, Piotr E. Marszalek, and Julio M. Fernandez. “Reverse engineering of the giant muscle protein titin.” Nature 418, no. 6901 (August 2002): 998–1002. https://doi.org/10.1038/nature00938.
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  - Marszalek, Piotr E., Hongbin Li, Andres F. Oberhauser, and Julio M. Fernandez. “Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM.” Proceedings of the National Academy of Sciences of the United States of America 99, no. 7 (April 2002): 4278–83. https://doi.org/10.1073/pnas.072435699.
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  - Fernandez, J. M., M. Carrion Vasquez, H. Li, A. Oberhauser, and P. Marszalek. “Stretching single molecules into novel conformations using the atomic force microscope.” Abstracts of Papers of the American Chemical Society 223 (2002): C30–31.
  - Marszalek, P. “Fingerprinting polysaccharides with single-molecule atomic force microscopy (AFM).” Abstracts of Papers of the American Chemical Society 224 (2002): U398–U398.
  - Marszalek, P. “Mechanical control of the pyranose ring conformations by single molecule AFM.” Abstracts of Papers of the American Chemical Society 223 (2002): C37–C37.
  - Li, H. B., W. A. Linke, A. F. Oberhauser, M. Carrion-Vazquez, P. E. Marszalek, and J. M. Fernandez. “Reconstitution of the passive elasticity of muscle from single molecule AFM experiments.” Biophysical Journal 82, no. 1 (2002): 193A-193A.
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  - Marszalek, P. E., H. B. Li, A. F. Oberhauser, and J. M. Fernandez. “Chair-boat transitions in single polysaccharide molecules observed with force-clamp AFM.” Biophysical Journal 82, no. 1 (2002): 41A-41A.
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  - Marszalek, P. E., H. Li, and J. M. Fernandez. “Fingerprinting polysaccharides with single-molecule atomic force microscopy.” Nature Biotechnology 19, no. 3 (March 2001): 258–62. https://doi.org/10.1038/85712.
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  - Li, H. B., M. Carrion-Vazquez, A. F. Oberhauser, P. E. Marszalek, and J. M. Fernandez. “Point mutations alter the mechanical stability of immunoglobulin modules.” Biophysical Journal 80, no. 1 (2001): 201A-201A.
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  - Marszalek, P. E., A. F. Oberhauser, and J. M. Fernandez. “Two-state model of polysaccharide elasticity probed with the force clamp mode of AFM.” Biophysical Journal 80, no. 1 (2001): 154A-154A.
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  - Marszalek, P. E., H. B. Li, and J. M. Fernandez. “Fingerprinting polysaccharides with single molecule atomic force microscopy.” Biophysical Journal 80, no. 1 (2001): 156A-156A.
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  - Li, H., M. Carrion-Vazquez, A. F. Oberhauser, P. E. Marszalek, and J. M. Fernandez. “Point mutations alter the mechanical stability of immunoglobulin modules.” Nature Structural Biology 7, no. 12 (December 2000): 1117–20. https://doi.org/10.1038/81964.
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  - Fisher, T. E., M. Carrion-Vazquez, A. F. Oberhauser, H. Li, P. E. Marszalek, and J. M. Fernandez. “Single molecular force spectroscopy of modular proteins in the nervous system.” Neuron 27, no. 3 (September 2000): 435–46. https://doi.org/10.1016/s0896-6273(00)00055-6.
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  - Fisher, T. E., P. E. Marszalek, and J. M. Fernandez. “Stretching single molecules into novel conformations using the atomic force microscope.” Nature Structural Biology 7, no. 9 (September 2000): 719–24. https://doi.org/10.1038/78936.
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  - Marszalek, P. E., W. J. Greenleaf, H. Li, A. F. Oberhauser, and J. M. Fernandez. “Atomic force microscopy captures quantized plastic deformation in gold nanowires.” Proceedings of the National Academy of Sciences of the United States of America 97, no. 12 (June 2000): 6282–86. https://doi.org/10.1073/pnas.97.12.6282.
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  - Carrion-Vazquez, M., A. F. Oberhauser, T. E. Fisher, P. E. Marszalek, H. Li, and J. M. Fernandez. “Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.” Progress in Biophysics and Molecular Biology 74, no. 1–2 (January 2000): 63–91. https://doi.org/10.1016/s0079-6107(00)00017-1.
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  - Czernicki, Z., A. Dowzenko, J. Andrychowski, M. Głowacki, and P. Marszałek. “Combined treatment of cerebral aneurysms with utilization of clipping and coiling techniques.” Neurologia I Neurochirurgia Polska 34, no. 6 Suppl (January 2000): 21–26.
  - Oberhauser, A. F., T. Ohashi, P. E. Marszalek, H. P. Erickson, and J. M. Fernandez. “The micromechanics of single fibronectin proteins studied with atomic force microscopy.” Biophysical Journal 78, no. 1 (January 1, 2000): 447A-447A.
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  - Fisher, T. E., A. F. Oberhauser, M. CarrionVazquez, P. E. Marszalek, and J. M. Fernandez. “The study of protein mechanics with the atomic force microscope (vol 24, pg 379, 1999).” Trends in Biochemical Sciences 25, no. 1 (2000): 6–6.
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  - Li, H., A. Oberhauser, S. Fowler, J. Clarke, P. E. Marszalek, and J. M. Fernandez. “Mechanical unfolding of titin is under kinetic control.” Biophysical Journal 78, no. 1 (2000): 402A-402A.
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  - Marszalek, P. E., H. Lu, H. Li, M. Carrion-Vazquez, A. F. Oberhauser, K. Schulten, and J. M. Fernandez. “Mechanical unfolding intermediates in titin modules captured by single molecule AFM.” Biophysical Journal 78, no. 1 (2000): 448A-448A.
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  - Marszalek, P. E., W. J. Greenleaf, T. E. Fisher, A. F. Oberhauser, M. Carrion-Vazuez, H. Li, and J. M. Fernandez. “Mechanical properties of biological and inorganic mesoscopic systems studied with single molecule AFM.” Biophysical Journal 78, no. 1 (2000): 10A-10A.
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  - Marszalek, P. E., A. F. Oberhauser, M. Carrion-Vazquez, and J. M. Fernandez. “Conformational transitions in single protein and polysaccharide molecules studied with AFM techniques.” Annual International Conference of the Ieee Engineering in Medicine and Biology Proceedings 1 (December 1, 1999): 78.
  - Oberhauser, A. F., P. E. Marszalek, M. Carrion-Vazquez, and J. M. Fernandez. “Force spectroscopy of cell adhesion molecules.” Annual International Conference of the Ieee Engineering in Medicine and Biology Proceedings 2 (December 1, 1999): 1299.
  - Marszalek, P. E., H. Lu, H. Li, M. Carrion-Vazquez, A. F. Oberhauser, K. Schulten, and J. M. Fernandez. “Mechanical unfolding intermediates in titin modules.” Nature 402, no. 6757 (November 1999): 100–103. https://doi.org/10.1038/47083.
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  - Oberhauser, A. F., P. E. Marszalek, M. Carrion-Vazquez, and J. M. Fernandez. “Single protein misfolding events captured by atomic force microscopy.” Nature Structural Biology 6, no. 11 (November 1999): 1025–28. https://doi.org/10.1038/14907.
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  - Fisher, T. E., A. F. Oberhauser, M. Carrion-Vazquez, P. E. Marszalek, and J. M. Fernandez. “The study of protein mechanics with the atomic force microscope.” Trends in Biochemical Sciences 24, no. 10 (October 1999): 379–84. https://doi.org/10.1016/s0968-0004(99)01453-x.
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  - Fisher, T. E., P. E. Marszalek, A. F. Oberhauser, M. Carrion-Vazquez, and J. M. Fernandez. “The micro-mechanics of single molecules studied with atomic force microscopy.” The Journal of Physiology 520 Pt 1 (October 1999): 5–14. https://doi.org/10.1111/j.1469-7793.1999.00005.x.
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  - Carrion-Vazquez, M., P. E. Marszalek, A. F. Oberhauser, and J. M. Fernandez. “Atomic force microscopy captures length phenotypes in single proteins.” Proceedings of the National Academy of Sciences of the United States of America 96, no. 20 (September 1999): 11288–92. https://doi.org/10.1073/pnas.96.20.11288.
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  - Marszalek, P. E., Y. P. Pang, H. Li, J. El Yazal, A. F. Oberhauser, and J. M. Fernandez. “Atomic levers control pyranose ring conformations.” Proceedings of the National Academy of Sciences of the United States of America 96, no. 14 (July 1999): 7894–98. https://doi.org/10.1073/pnas.96.14.7894.
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  - Carrion-Vazquez, M., A. F. Oberhauser, S. B. Fowler, P. E. Marszalek, S. E. Broedel, J. Clarke, and J. M. Fernandez. “Mechanical and chemical unfolding of a single protein: a comparison.” Proceedings of the National Academy of Sciences of the United States of America 96, no. 7 (March 1999): 3694–99. https://doi.org/10.1073/pnas.96.7.3694.
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  - Matyja, E., A. Taraszewska, and P. Marszałek. “Necrosis and apoptosis of tumor cells in embolized meningiomas: histopathology and P53, BCL-2, CD-68 immunohistochemistry.” Folia Neuropathologica 37, no. 2 (January 1999): 93–98.
  - Carrion-Vazquez, M., A. F. Oberhauser, S. B. Fowler, P. E. Marszalek, S. E. Broedel, J. Clarke, and J. M. Fernandez. “AFM and chemical unfolding of a single protein follow the same pathway.” Biophysical Journal 76, no. 1 (1999): A173–A173.
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  - Carrion-Vazquez, M., W. J. Greenleaf, A. F. Oberhauser, P. E. Marszalek, and J. M. Fernandez. “AFM measurements of protein unfolding: A molecular caliper with amino acid resolution.” Biophysical Journal 76, no. 1 (1999): A173–A173.
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  - Marszalek, P. E., A. F. Oberhauser, Y. P. Pang, and J. M. Fernandez. “The glucopyranose ring: An elastic switch disabled by periodate oxidation.” Biophysical Journal 76, no. 1 (1999): A352–A352.
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  - Oberhauser, A. F., P. E. Marszalek, M. Carrion-Vazquez, and J. M. Fernandez. “Protein misfolding events captured by single molecule AFM spectroscopy.” Biophysical Journal 76, no. 1 (1999): A106–A106.
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  - Marszalek, P. E., A. F. Oberhauser, Y. P. Pang, and J. M. Fernandez. “Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring.” Nature 396, no. 6712 (December 1998): 661–64. https://doi.org/10.1038/25322.
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  - Oberhauser, A. F., P. E. Marszalek, H. P. Erickson, and J. M. Fernandez. “The molecular elasticity of the extracellular matrix protein tenascin.” Nature 393, no. 6681 (May 14, 1998): 181–85. https://doi.org/10.1038/30270.
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  - Marszalek, P. E., A. F. Oberhauser, Y. P. Pang, and J. M. Fernandez. “The glucopyranose ring: An elastic switch disabled by periodate oxidation.” Molecular Biology of the Cell 9 (1998): 198A-198A.
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  - Marszalek, P. E., B. Farrell, P. Verdugo, and J. M. Fernandez. “Kinetics of release of serotonin from isolated secretory granules. I. Amperometric detection of serotonin from electroporated granules.” Biophysical Journal 73, no. 3 (September 1997): 1160–68. https://doi.org/10.1016/s0006-3495(97)78148-7.
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  - Marszalek, P. E., B. Farrell, P. Verdugo, and J. M. Fernandez. “Kinetics of release of serotonin from isolated secretory granules. II. Ion exchange determines the diffusivity of serotonin.” Biophysical Journal 73, no. 3 (September 1997): 1169–83. https://doi.org/10.1016/s0006-3495(97)78149-9.
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  - Xie, T. D., Y. Chen, P. Marszalek, and T. Y. Tsong. “Fluctuation-driven directional flow in biochemical cycle: further study of electric activation of Na,K pumps.” Biophysical Journal 72, no. 6 (June 1997): 2496–2502. https://doi.org/10.1016/s0006-3495(97)78894-5.
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  - Marszałek, P., J. Jurkiewicz, E. Fersten, E. Luczywek, Z. Czernicki, J. Gielecki, and J. Bogucki. “[Multi-stage method for the diagnosis of low-pressure hydrocephalus].” Neurologia I Neurochirurgia Polska 31, no. 3 (May 1997): 523–35.
  - Farrell, B., P. Marszalek, and J. M. Fernandez. “Scaling laws of amine release: Role of the exocytotic fusion pore.” Biophysical Journal 72, no. 2 (1997): TUP98–TUP98.
  - Marszalek, P., B. Farrell, and J. Fernandez. “Kinetics of the release of serotonin from isolated secretory granules.” Biophysical Journal 70, no. 2 (1996): MPME5–MPME5.
  - Marszalek, P., B. Farrell, and J. M. Fernandez. “Ion-exchange gel regulates neurotransmitter release through the exocytotic fusion pore.” Society of General Physiologists Series 51 (January 1996): 211–22.
  - Marszalek, P. E., V. S. Markin, T. Tanaka, H. Kawaguchi, and J. M. Fernandez. “Pulsed Laser Imaging Demonstrates the Mechanism of Current Rectification at a Hydrogel Interface.” Langmuir 11, no. 11 (November 1, 1995): 4196–98. https://doi.org/10.1021/la00011a004.
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  - Marszalek, P. E., V. S. Markin, T. Tanaka, H. Kawaguchi, and J. M. Fernandez. “The secretory granule matrix-electrolyte interface: a homologue of the p-n rectifying junction.” Biophysical Journal 69, no. 4 (October 1995): 1218–29. https://doi.org/10.1016/s0006-3495(95)80004-4.
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  - Marszalek, P., and T. Y. Tsong. “Cell fission and formation of mini cell bodies by high frequency alternating electric field.” Biophysical Journal 68, no. 4 (April 1995): 1218–21. https://doi.org/10.1016/s0006-3495(95)80338-3.
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  - Xie, T. D., T. Y. Tsong, Y. D. Chen, and P. Marszalek. “Properties of Electroconformational Coupling (Ecc) - Activation of Na,K-Atpase by Electric Pulses of Fluctuating Lifetime and Fluctuating Amplitude.” Faseb Journal 9, no. 6 (1995): A1339–A1339.
  - Xie, T. D., P. Marszalek, Y. D. Chen, and T. Y. Tsong. “Recognition and processing of randomly fluctuating electric signals by Na,K-ATPase.” Biophysical Journal 67, no. 3 (September 1994): 1247–51. https://doi.org/10.1016/s0006-3495(94)80594-6.
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  - Tsong, T. Y., T. D. Xie, P. Marszalek, and Y. D. Chen. “Absorption of Free-Energy from Fluctuating Electric-Fields by a Membrane Ion-Pump to Perform Chemical Work.” Biophysical Journal 66, no. 2 (1994): A236–A236.
  - Pawłowski, P., I. Szutowicz, P. Marszałek, and M. Fikus. “Bioelectrorheological model of the cell. 5. Electrodestruction of cellular membrane in alternating electric field.” Biophysical Journal 65, no. 1 (July 1993): 541–49. https://doi.org/10.1016/s0006-3495(93)81056-7.
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  - Gimsa, J., P. Marszalek, U. Loewe, and T. Y. Tsong. “Electroporation in rotating electric fields.” Bioelectrochemistry and Bioenergetics 29, no. 1 (January 1, 1992): 81–89. https://doi.org/10.1016/0302-4598(92)80055-L.
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  - Gimsa, J., P. Marszalek, U. Loewe, and T. Y. Tsong. “Dielectrophoresis and electrorotation of neurospora slime and murine myeloma cells.” Biophysical Journal 60, no. 4 (October 1991): 749–60. https://doi.org/10.1016/s0006-3495(91)82109-9.
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  - Marszalek, P., J. J. Zielinsky, M. Fikus, and T. Y. Tsong. “Determination of electric parameters of cell membranes by a dielectrophoresis method.” Biophysical Journal 59, no. 5 (May 1991): 982–87. https://doi.org/10.1016/s0006-3495(91)82312-8.
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  - Marszalek, P., D. S. Liu, and T. Y. Tsong. “Schwan equation and transmembrane potential induced by alternating electric field.” Biophysical Journal 58, no. 4 (October 1990): 1053–58. https://doi.org/10.1016/s0006-3495(90)82447-4.
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  - Zieliński, J. J., P. Marszałek, and M. Fikus. “A new method for the investigation of cellular dielectrophoresis.” Zeitschrift Fur Naturforschung. C, Journal of Biosciences 44, no. 9–10 (September 1989): 845–48. https://doi.org/10.1515/znc-1989-9-1025.
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  - Marszalek, P., J. J. Zieliński, and M. Fikus. “Experimental verification of a theoretical treatment of the mechanism of dielectrophoresis.” Journal of Electroanalytical Chemistry 276, no. 3 (January 1, 1989): 289–98. https://doi.org/10.1016/0022-0728(89)87271-7.
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  - Marszałek, P., J. J. Zieliński, and M. Fikus. “Experimental verification of a theoretical treatment of the mechanism of dielectrophoresis.” Bioelectrochemistry and Bioenergetics 22, no. 3 (January 1, 1989): 289–98. https://doi.org/10.1016/0302-4598(89)87046-1.
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  - Fikus, M., P. Marszalek, S. Rozycki, and J. Zielinski. “Dielectrophoresis and Electrofusion of Neurospora-Crassa Slime.” Studia Biophysica 119, no. 1–3 (1987): 73–76.
  - Marszałek, P., and A. Godzik. “The Monte Carlo simulation of pearl chain formation.” Radiation and Environmental Biophysics 26, no. 4 (January 1987): 313–17. https://doi.org/10.1007/bf01221977.
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  - Fikus, M., E. Grzesiuk, P. Marszałek, S. Rózycki, and J. Zieliński. “Electrofusion of Neurospora crassa slime cells.” Fems Microbiology Letters 27, no. 1 (January 1, 1985): 123–27. https://doi.org/10.1111/j.1574-6968.1985.tb01651.x.
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  - Fikus, M., E. Grzesiuk, and P. Marszalek. “Electrofusion of Neurospora crassa slime cells.” Fems Microbiology Letters 27, no. 1 (January 1, 1985): 123–27. https://doi.org/10.1016/0378-1097(85)90256-3.
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- Book Sections
  - Josephs, E. A., P. E. Marszalek, and Z. N. Scholl. “Atomic force microscope force spectroscopy.” In An Introduction to Single Molecule Biophysics, 79–114, 2017. https://doi.org/10.1201/b22505.
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  - Lee, W., P. E. Marszalek, X. Zeng, and W. Yang. “Mechanics of polysaccharides.” In Molecular Manipulation with Atomic Force Microscopy, 83–128, 2011.
- Conference Papers
  - Kelner, J. M., C. Ziolkowski, and P. Marszalek. “Influence of the frequency stability on the emitter position in SDF method.” In 2016 International Conference on Military Communications and Information Systems, Icmcis 2016, 2016. https://doi.org/10.1109/ICMCIS.2016.7496554.
    Full Text
  - Malon, K., P. Skokowski, P. Marszalek, J. M. Kelner, and J. Lopatka. “Cognitive manager for hierarchical cluster networks based on multi-stage machine method.” In Proceedings Ieee Military Communications Conference Milcom, 428–33, 2014. https://doi.org/10.1109/MILCOM.2014.77.
    Full Text
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