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Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.

Publication ,  Journal Article
Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium,
Published in: Mol Autism
2017

BACKGROUND: Over the past decade genome-wide association studies (GWAS) have been applied to aid in the understanding of the biology of traits. The success of this approach is governed by the underlying effect sizes carried by the true risk variants and the corresponding statistical power to observe such effects given the study design and sample size under investigation. Previous ASD GWAS have identified genome-wide significant (GWS) risk loci; however, these studies were of only of low statistical power to identify GWS loci at the lower effect sizes (odds ratio (OR) <1.15). METHODS: We conducted a large-scale coordinated international collaboration to combine independent genotyping data to improve the statistical power and aid in robust discovery of GWS loci. This study uses genome-wide genotyping data from a discovery sample (7387 ASD cases and 8567 controls) followed by meta-analysis of summary statistics from two replication sets (7783 ASD cases and 11359 controls; and 1369 ASD cases and 137308 controls). RESULTS: We observe a GWS locus at 10q24.32 that overlaps several genes including PITX3, which encodes a transcription factor identified as playing a role in neuronal differentiation and CUEDC2 previously reported to be associated with social skills in an independent population cohort. We also observe overlap with regions previously implicated in schizophrenia which was further supported by a strong genetic correlation between these disorders (Rg = 0.23; P = 9 × 10-6). We further combined these Psychiatric Genomics Consortium (PGC) ASD GWAS data with the recent PGC schizophrenia GWAS to identify additional regions which may be important in a common neurodevelopmental phenotype and identified 12 novel GWS loci. These include loci previously implicated in ASD such as FOXP1 at 3p13, ATP2B2 at 3p25.3, and a 'neurodevelopmental hub' on chromosome 8p11.23. CONCLUSIONS: This study is an important step in the ongoing endeavour to identify the loci which underpin the common variant signal in ASD. In addition to novel GWS loci, we have identified a significant genetic correlation with schizophrenia and association of ASD with several neurodevelopmental-related genes such as EXT1, ASTN2, MACROD2, and HDAC4.

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Published In

Mol Autism

DOI

EISSN

2040-2392

Publication Date

2017

Volume

8

Start / End Page

21

Location

England

Related Subject Headings

  • Transcription Factors
  • Schizophrenia
  • Repressor Proteins
  • Plasma Membrane Calcium-Transporting ATPases
  • Membrane Proteins
  • Male
  • Humans
  • Homeodomain Proteins
  • Genome-Wide Association Study
  • Genetic Predisposition to Disease
 

Citation

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Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium, . (2017). Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia. Mol Autism, 8, 21. https://doi.org/10.1186/s13229-017-0137-9
Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium, Sherwood L. “Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.Mol Autism 8 (2017): 21. https://doi.org/10.1186/s13229-017-0137-9.
Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium, Sherwood L. “Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.Mol Autism, vol. 8, 2017, p. 21. Pubmed, doi:10.1186/s13229-017-0137-9.
Journal cover image

Published In

Mol Autism

DOI

EISSN

2040-2392

Publication Date

2017

Volume

8

Start / End Page

21

Location

England

Related Subject Headings

  • Transcription Factors
  • Schizophrenia
  • Repressor Proteins
  • Plasma Membrane Calcium-Transporting ATPases
  • Membrane Proteins
  • Male
  • Humans
  • Homeodomain Proteins
  • Genome-Wide Association Study
  • Genetic Predisposition to Disease