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Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL.

Publication ,  Journal Article
Upadhyay, U; Zhuang, GZ; Diatchenko, L; Parisien, M; Kang, Y; Sarantopoulos, KD; Martin, ER; Smith, SB; Maixner, W; Levitt, RC
Published in: PLoS Genet
June 2019

Carbonic anhydrase-8 (CA8) is an intracellular protein that functions as an allosteric inhibitor of inositol trisphosphate receptor-1 (ITPR1) critical to intracellular Ca++ release, synaptic functions and neuronal excitability. We showed previously that murine nociception and analgesic responses are regulated by the expression of this gene in dorsal root ganglion (DRG) associated with a cis-eQTL. In this report, we identify an exon-level cis-eQTL (rs6471859) that regulates human DRG CA8 alternative splicing, producing a truncated 1,697bp transcript (e.g., CA8-204). Our functional genomic studies show the "G" allele at rs6471859 produces a cryptic 3'UTR splice site regulating expression of CA8-204. We developed constructs to study the expression and function of the naturally occurring CA8-204G transcript (G allele at rs6471859), CA8-204C (C allele at rs6471859 reversion mutation) and CA8-201 (full length transcript). CA8-204G transcript expression occurred predominantly in non-neuronal cells (HEK293), while CA8-204C expression was restricted to neuronal derived cells (NBL) in vitro. CA8-204G produced a stable truncated transcript in HEK293 cells that was barely detectable in NBL cells. We also show CA8-204 produces a stable peptide that inhibits pITPR1 and Ca++ release in HEK293 cells. These results imply homozygous G/G individuals at rs6471859, which are common in the general population, produce exclusively CA8-204G that is barely detectable in neuronal cells. CA8 null mutations that greatly impact neuronal functions are associated with severe forms of spinal cerebellar ataxia, and our data suggest G/G homozygotes should display a similar phenotype. To address this question, we show in vivo using AAV8-FLAG-CA8-204G and AAV8-V5-CA8-201 gene transfer delivered via intra-neural sciatic nerve injection (SN), that these viral constructs are able to transduce DRG cells and produce similar analgesic and anti-hyperalgesic responses to inflammatory pain. Immunohistochemistry (IHC) examinations of DRG tissues further show CA8-204G peptide is expressed in advillin expressing neuronal cells, but to a lesser extent compared to glial cells. These findings explain why G/G homozygotes that exclusively produce this truncated functional peptide in DRG evade a severe phenotype. These genomic studies significantly advance the literature regarding structure-function studies on CA8-ITPR1 critical to calcium signaling pathways, synaptic functioning, neuronal excitability and analgesic responses.

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Published In

PLoS Genet

DOI

EISSN

1553-7404

Publication Date

June 2019

Volume

15

Issue

6

Start / End Page

e1008226

Location

United States

Related Subject Headings

  • Sciatic Nerve
  • RNA Splice Sites
  • Quantitative Trait Loci
  • Peptides
  • Pain
  • Organ Specificity
  • Neurons
  • Mutation
  • Mice
  • Inositol 1,4,5-Trisphosphate Receptors
 

Citation

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Upadhyay, U., Zhuang, G. Z., Diatchenko, L., Parisien, M., Kang, Y., Sarantopoulos, K. D., … Levitt, R. C. (2019). Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL. PLoS Genet, 15(6), e1008226. https://doi.org/10.1371/journal.pgen.1008226
Upadhyay, Udita, Gerald Z. Zhuang, Luda Diatchenko, Marc Parisien, Yuan Kang, Konstantinos D. Sarantopoulos, Eden R. Martin, Shad B. Smith, William Maixner, and Roy C. Levitt. “Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL.PLoS Genet 15, no. 6 (June 2019): e1008226. https://doi.org/10.1371/journal.pgen.1008226.
Upadhyay U, Zhuang GZ, Diatchenko L, Parisien M, Kang Y, Sarantopoulos KD, et al. Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL. PLoS Genet. 2019 Jun;15(6):e1008226.
Upadhyay, Udita, et al. “Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL.PLoS Genet, vol. 15, no. 6, June 2019, p. e1008226. Pubmed, doi:10.1371/journal.pgen.1008226.
Upadhyay U, Zhuang GZ, Diatchenko L, Parisien M, Kang Y, Sarantopoulos KD, Martin ER, Smith SB, Maixner W, Levitt RC. Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL. PLoS Genet. 2019 Jun;15(6):e1008226.

Published In

PLoS Genet

DOI

EISSN

1553-7404

Publication Date

June 2019

Volume

15

Issue

6

Start / End Page

e1008226

Location

United States

Related Subject Headings

  • Sciatic Nerve
  • RNA Splice Sites
  • Quantitative Trait Loci
  • Peptides
  • Pain
  • Organ Specificity
  • Neurons
  • Mutation
  • Mice
  • Inositol 1,4,5-Trisphosphate Receptors