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Why sequence all eukaryotes?

Publication ,  Journal Article
Blaxter, M; Archibald, JM; Childers, AK; Coddington, JA; Crandall, KA; Di Palma, F; Durbin, R; Edwards, SV; Graves, JAM; Hackett, KJ; Hall, N ...
Published in: Proc Natl Acad Sci U S A
January 25, 2022

Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes-about 2 million species-should be sequenced to high quality to produce a digital library of life on Earth, beginning with strategic phylogenetic, ecological, and high-impact priorities. Here we discuss why we should sequence all eukaryotic species, not just a representative few scattered across the many branches of the tree of life. We suggest that many questions of evolutionary and ecological significance will only be addressable when whole-genome data representing divergences at all of the branchings in the tree of life or all species in natural ecosystems are available. We envisage that a genomic tree of life will foster understanding of the ongoing processes of speciation, adaptation, and organismal dependencies within entire ecosystems. These explorations will resolve long-standing problems in phylogenetics, evolution, ecology, conservation, agriculture, bioindustry, and medicine.

Duke Scholars

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Published In

Proc Natl Acad Sci U S A

DOI

EISSN

1091-6490

Publication Date

January 25, 2022

Volume

119

Issue

4

Location

United States

Related Subject Headings

  • Phylogeny
  • Humans
  • Genomics
  • Genome
  • Eukaryota
  • Ecosystem
  • Ecology
  • Biological Evolution
  • Biodiversity
  • Base Sequence
 

Citation

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Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., … Lewin, H. A. (2022). Why sequence all eukaryotes? Proc Natl Acad Sci U S A, 119(4). https://doi.org/10.1073/pnas.2115636118
Blaxter, Mark, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, et al. “Why sequence all eukaryotes?Proc Natl Acad Sci U S A 119, no. 4 (January 25, 2022). https://doi.org/10.1073/pnas.2115636118.
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, et al. Why sequence all eukaryotes? Proc Natl Acad Sci U S A. 2022 Jan 25;119(4).
Blaxter, Mark, et al. “Why sequence all eukaryotes?Proc Natl Acad Sci U S A, vol. 119, no. 4, Jan. 2022. Pubmed, doi:10.1073/pnas.2115636118.
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, Kuraku S, Lawniczak MKN, Lindblad-Toh K, Lopez JV, Moran NA, Robinson GE, Ryder OA, Shapiro B, Soltis PS, Warnow T, Zhang G, Lewin HA. Why sequence all eukaryotes? Proc Natl Acad Sci U S A. 2022 Jan 25;119(4).
Journal cover image

Published In

Proc Natl Acad Sci U S A

DOI

EISSN

1091-6490

Publication Date

January 25, 2022

Volume

119

Issue

4

Location

United States

Related Subject Headings

  • Phylogeny
  • Humans
  • Genomics
  • Genome
  • Eukaryota
  • Ecosystem
  • Ecology
  • Biological Evolution
  • Biodiversity
  • Base Sequence