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Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images.

Publication ,  Journal Article
Prince, EW; Whelan, R; Mirsky, DM; Stence, N; Staulcup, S; Klimo, P; Anderson, RCE; Niazi, TN; Grant, G; Souweidane, M; Johnston, JM; Smith, A ...
Published in: Sci Rep
October 9, 2020

Deep learning (DL) is a widely applied mathematical modeling technique. Classically, DL models utilize large volumes of training data, which are not available in many healthcare contexts. For patients with brain tumors, non-invasive diagnosis would represent a substantial clinical advance, potentially sparing patients from the risks associated with surgical intervention on the brain. Such an approach will depend upon highly accurate models built using the limited datasets that are available. Herein, we present a novel genetic algorithm (GA) that identifies optimal architecture parameters using feature embeddings from state-of-the-art image classification networks to identify the pediatric brain tumor, adamantinomatous craniopharyngioma (ACP). We optimized classification models for preoperative Computed Tomography (CT), Magnetic Resonance Imaging (MRI), and combined CT and MRI datasets with demonstrated test accuracies of 85.3%, 83.3%, and 87.8%, respectively. Notably, our GA improved baseline model performance by up to 38%. This work advances DL and its applications within healthcare by identifying optimized networks in small-scale data contexts. The proposed system is easily implementable and scalable for non-invasive computer-aided diagnosis, even for uncommon diseases.

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Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

October 9, 2020

Volume

10

Issue

1

Start / End Page

16885

Location

England

Related Subject Headings

  • Tomography, X-Ray Computed
  • Preoperative Period
  • Neural Networks, Computer
  • Models, Theoretical
  • Magnetic Resonance Imaging
  • Image Processing, Computer-Assisted
  • Humans
  • Diagnosis, Computer-Assisted
  • Deep Learning
  • Craniopharyngioma
 

Citation

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Prince, E. W., Whelan, R., Mirsky, D. M., Stence, N., Staulcup, S., Klimo, P., … Hankinson, T. C. (2020). Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images. Sci Rep, 10(1), 16885. https://doi.org/10.1038/s41598-020-73278-8
Prince, Eric W., Ros Whelan, David M. Mirsky, Nicholas Stence, Susan Staulcup, Paul Klimo, Richard C. E. Anderson, et al. “Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images.Sci Rep 10, no. 1 (October 9, 2020): 16885. https://doi.org/10.1038/s41598-020-73278-8.
Prince EW, Whelan R, Mirsky DM, Stence N, Staulcup S, Klimo P, et al. Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images. Sci Rep. 2020 Oct 9;10(1):16885.
Prince, Eric W., et al. “Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images.Sci Rep, vol. 10, no. 1, Oct. 2020, p. 16885. Pubmed, doi:10.1038/s41598-020-73278-8.
Prince EW, Whelan R, Mirsky DM, Stence N, Staulcup S, Klimo P, Anderson RCE, Niazi TN, Grant G, Souweidane M, Johnston JM, Jackson EM, Limbrick DD, Smith A, Drapeau A, Chern JJ, Kilburn L, Ginn K, Naftel R, Dudley R, Tyler-Kabara E, Jallo G, Handler MH, Jones K, Donson AM, Foreman NK, Hankinson TC. Robust deep learning classification of adamantinomatous craniopharyngioma from limited preoperative radiographic images. Sci Rep. 2020 Oct 9;10(1):16885.

Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

October 9, 2020

Volume

10

Issue

1

Start / End Page

16885

Location

England

Related Subject Headings

  • Tomography, X-Ray Computed
  • Preoperative Period
  • Neural Networks, Computer
  • Models, Theoretical
  • Magnetic Resonance Imaging
  • Image Processing, Computer-Assisted
  • Humans
  • Diagnosis, Computer-Assisted
  • Deep Learning
  • Craniopharyngioma