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Active RB causes visible changes in nuclear organization.

Publication ,  Journal Article
Krishnan, B; Yasuhara, T; Rumde, P; Stanzione, M; Lu, C; Lee, H; Lawrence, MS; Zou, L; Nieman, LT; Sanidas, I; Dyson, NJ
Published in: J Cell Biol
March 7, 2022

RB restricts G1/S progression by inhibiting E2F. Here, we show that sustained expression of active RB, and prolonged G1 arrest, causes visible changes in chromosome architecture that are not directly associated with E2F inhibition. Using FISH probes against two euchromatin RB-associated regions, two heterochromatin domains that lack RB-bound loci, and two whole-chromosome probes, we found that constitutively active RB (ΔCDK-RB) promoted a more diffuse, dispersed, and scattered chromatin organization. These changes were RB dependent, were driven by specific isoforms of monophosphorylated RB, and required known RB-associated activities. ΔCDK-RB altered physical interactions between RB-bound genomic loci, but the RB-induced changes in chromosome architecture were unaffected by dominant-negative DP1. The RB-induced changes appeared to be widespread and influenced chromosome localization within nuclei. Gene expression profiles revealed that the dispersion phenotype was associated with an increased autophagy response. We infer that, after cell cycle arrest, RB acts through noncanonical mechanisms to significantly change nuclear organization, and this reorganization correlates with transitions in cellular state.

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Published In

J Cell Biol

DOI

EISSN

1540-8140

Publication Date

March 7, 2022

Volume

221

Issue

3

Location

United States

Related Subject Headings

  • Retinoblastoma Protein
  • Protein Binding
  • Phenotype
  • Mutation
  • Humans
  • Histone Deacetylases
  • Developmental Biology
  • DNA Topoisomerases, Type I
  • Chromatin
  • Cell Nucleus
 

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Krishnan, B., Yasuhara, T., Rumde, P., Stanzione, M., Lu, C., Lee, H., … Dyson, N. J. (2022). Active RB causes visible changes in nuclear organization. J Cell Biol, 221(3). https://doi.org/10.1083/jcb.202102144
Krishnan, Badri, Takaaki Yasuhara, Purva Rumde, Marcello Stanzione, Chenyue Lu, Hanjun Lee, Michael S. Lawrence, et al. “Active RB causes visible changes in nuclear organization.J Cell Biol 221, no. 3 (March 7, 2022). https://doi.org/10.1083/jcb.202102144.
Krishnan B, Yasuhara T, Rumde P, Stanzione M, Lu C, Lee H, et al. Active RB causes visible changes in nuclear organization. J Cell Biol. 2022 Mar 7;221(3).
Krishnan, Badri, et al. “Active RB causes visible changes in nuclear organization.J Cell Biol, vol. 221, no. 3, Mar. 2022. Pubmed, doi:10.1083/jcb.202102144.
Krishnan B, Yasuhara T, Rumde P, Stanzione M, Lu C, Lee H, Lawrence MS, Zou L, Nieman LT, Sanidas I, Dyson NJ. Active RB causes visible changes in nuclear organization. J Cell Biol. 2022 Mar 7;221(3).

Published In

J Cell Biol

DOI

EISSN

1540-8140

Publication Date

March 7, 2022

Volume

221

Issue

3

Location

United States

Related Subject Headings

  • Retinoblastoma Protein
  • Protein Binding
  • Phenotype
  • Mutation
  • Humans
  • Histone Deacetylases
  • Developmental Biology
  • DNA Topoisomerases, Type I
  • Chromatin
  • Cell Nucleus