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Deep learning generates synthetic cancer histology for explainability and education.

Publication ,  Journal Article
Dolezal, JM; Wolk, R; Hieromnimon, HM; Howard, FM; Srisuwananukorn, A; Karpeyev, D; Ramesh, S; Kochanny, S; Kwon, JW; Agni, M; Simon, RC ...
Published in: NPJ Precis Oncol
May 29, 2023

Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology.

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Published In

NPJ Precis Oncol

DOI

ISSN

2397-768X

Publication Date

May 29, 2023

Volume

7

Issue

1

Start / End Page

49

Location

England

Related Subject Headings

  • 3211 Oncology and carcinogenesis
  • 3204 Immunology
 

Citation

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Dolezal, J. M., Wolk, R., Hieromnimon, H. M., Howard, F. M., Srisuwananukorn, A., Karpeyev, D., … Pearson, A. T. (2023). Deep learning generates synthetic cancer histology for explainability and education. NPJ Precis Oncol, 7(1), 49. https://doi.org/10.1038/s41698-023-00399-4
Dolezal, James M., Rachelle Wolk, Hanna M. Hieromnimon, Frederick M. Howard, Andrew Srisuwananukorn, Dmitry Karpeyev, Siddhi Ramesh, et al. “Deep learning generates synthetic cancer histology for explainability and education.NPJ Precis Oncol 7, no. 1 (May 29, 2023): 49. https://doi.org/10.1038/s41698-023-00399-4.
Dolezal JM, Wolk R, Hieromnimon HM, Howard FM, Srisuwananukorn A, Karpeyev D, et al. Deep learning generates synthetic cancer histology for explainability and education. NPJ Precis Oncol. 2023 May 29;7(1):49.
Dolezal, James M., et al. “Deep learning generates synthetic cancer histology for explainability and education.NPJ Precis Oncol, vol. 7, no. 1, May 2023, p. 49. Pubmed, doi:10.1038/s41698-023-00399-4.
Dolezal JM, Wolk R, Hieromnimon HM, Howard FM, Srisuwananukorn A, Karpeyev D, Ramesh S, Kochanny S, Kwon JW, Agni M, Simon RC, Desai C, Kherallah R, Nguyen TD, Schulte JJ, Cole K, Khramtsova G, Garassino MC, Husain AN, Li H, Grossman R, Cipriani NA, Pearson AT. Deep learning generates synthetic cancer histology for explainability and education. NPJ Precis Oncol. 2023 May 29;7(1):49.

Published In

NPJ Precis Oncol

DOI

ISSN

2397-768X

Publication Date

May 29, 2023

Volume

7

Issue

1

Start / End Page

49

Location

England

Related Subject Headings

  • 3211 Oncology and carcinogenesis
  • 3204 Immunology