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Community recommendations on cryoEM data archiving and validation.

Publication ,  Journal Article
Kleywegt, GJ; Adams, PD; Butcher, SJ; Lawson, CL; Rohou, A; Rosenthal, PB; Subramaniam, S; Topf, M; Abbott, S; Baldwin, PR; Berrisford, JM ...
Published in: IUCrJ
March 1, 2024

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.

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Published In

IUCrJ

DOI

EISSN

2052-2525

Publication Date

March 1, 2024

Volume

11

Issue

Pt 2

Start / End Page

140 / 151

Location

England

Related Subject Headings

  • Data Curation
  • Cryoelectron Microscopy
  • 5104 Condensed matter physics
  • 3406 Physical chemistry
  • 0306 Physical Chemistry (incl. Structural)
  • 0204 Condensed Matter Physics
  • 0202 Atomic, Molecular, Nuclear, Particle and Plasma Physics
 

Citation

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Kleywegt, G. J., Adams, P. D., Butcher, S. J., Lawson, C. L., Rohou, A., Rosenthal, P. B., … Velankar, S. (2024). Community recommendations on cryoEM data archiving and validation. IUCrJ, 11(Pt 2), 140–151. https://doi.org/10.1107/S2052252524001246
Kleywegt, Gerard J., Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, et al. “Community recommendations on cryoEM data archiving and validation.IUCrJ 11, no. Pt 2 (March 1, 2024): 140–51. https://doi.org/10.1107/S2052252524001246.
Kleywegt GJ, Adams PD, Butcher SJ, Lawson CL, Rohou A, Rosenthal PB, et al. Community recommendations on cryoEM data archiving and validation. IUCrJ. 2024 Mar 1;11(Pt 2):140–51.
Kleywegt, Gerard J., et al. “Community recommendations on cryoEM data archiving and validation.IUCrJ, vol. 11, no. Pt 2, Mar. 2024, pp. 140–51. Pubmed, doi:10.1107/S2052252524001246.
Kleywegt GJ, Adams PD, Butcher SJ, Lawson CL, Rohou A, Rosenthal PB, Subramaniam S, Topf M, Abbott S, Baldwin PR, Berrisford JM, Bricogne G, Choudhary P, Croll TI, Danev R, Ganesan SJ, Grant T, Gutmanas A, Henderson R, Heymann JB, Huiskonen JT, Istrate A, Kato T, Lander GC, Lok SM, Ludtke SJ, Murshudov GN, Pye R, Pintilie GD, Richardson JS, Sachse C, Salih O, Scheres SHW, Schroeder GF, Sorzano COS, Stagg SM, Wang Z, Warshamanage R, Westbrook JD, Winn MD, Young JY, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S. Community recommendations on cryoEM data archiving and validation. IUCrJ. 2024 Mar 1;11(Pt 2):140–151.

Published In

IUCrJ

DOI

EISSN

2052-2525

Publication Date

March 1, 2024

Volume

11

Issue

Pt 2

Start / End Page

140 / 151

Location

England

Related Subject Headings

  • Data Curation
  • Cryoelectron Microscopy
  • 5104 Condensed matter physics
  • 3406 Physical chemistry
  • 0306 Physical Chemistry (incl. Structural)
  • 0204 Condensed Matter Physics
  • 0202 Atomic, Molecular, Nuclear, Particle and Plasma Physics