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PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery.

Publication ,  Journal Article
Yang, J-F; Wang, F; Jiang, W; Zhou, G-Y; Li, C-Z; Zhu, X-L; Hao, G-F; Yang, G-F
Published in: J Chem Inf Model
September 24, 2018

Structural analyses of drugs and pesticides can enable the identification of new bioactive compounds with novel and diverse scaffolds as well as improve our understanding of the bioactive fragment space. The Pesticide And Drug Fragments (PADFrag) database is a unique bioinformatic-cheminformatic cross-referencing resource that combines detailed bioactive fragment data and potential targets with a strong focus on quantitative, analytic, and molecular-scale information for the exploration of bioactive fragment space for drug discovery ( http://chemyang.ccnu.edu.cn/ccb/database/PADFrag/ ). The main applications of PADFrag are the analysis of the privileged structures within known bioactive molecules, ab initio molecule library design, and core fragment discovery for fragment-based drug design. Other potential applications include prediction of fragment interactions and general pharmaceutical research.

Duke Scholars

Published In

J Chem Inf Model

DOI

EISSN

1549-960X

Publication Date

September 24, 2018

Volume

58

Issue

9

Start / End Page

1725 / 1730

Location

United States

Related Subject Headings

  • Software
  • Small Molecule Libraries
  • Molecular Structure
  • Mitogen-Activated Protein Kinase Kinases
  • Medicinal & Biomolecular Chemistry
  • Drug Discovery
  • Drug Design
  • Databases, Factual
  • Computational Biology
  • 3407 Theoretical and computational chemistry
 

Citation

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MLA
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Yang, J.-F., Wang, F., Jiang, W., Zhou, G.-Y., Li, C.-Z., Zhu, X.-L., … Yang, G.-F. (2018). PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery. J Chem Inf Model, 58(9), 1725–1730. https://doi.org/10.1021/acs.jcim.8b00285
Yang, Jing-Fang, Fan Wang, Wen Jiang, Guang-You Zhou, Cheng-Zhang Li, Xiao-Lei Zhu, Ge-Fei Hao, and Guang-Fu Yang. “PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery.J Chem Inf Model 58, no. 9 (September 24, 2018): 1725–30. https://doi.org/10.1021/acs.jcim.8b00285.
Yang J-F, Wang F, Jiang W, Zhou G-Y, Li C-Z, Zhu X-L, et al. PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery. J Chem Inf Model. 2018 Sep 24;58(9):1725–30.
Yang, Jing-Fang, et al. “PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery.J Chem Inf Model, vol. 58, no. 9, Sept. 2018, pp. 1725–30. Pubmed, doi:10.1021/acs.jcim.8b00285.
Yang J-F, Wang F, Jiang W, Zhou G-Y, Li C-Z, Zhu X-L, Hao G-F, Yang G-F. PADFrag: A Database Built for the Exploration of Bioactive Fragment Space for Drug Discovery. J Chem Inf Model. 2018 Sep 24;58(9):1725–1730.
Journal cover image

Published In

J Chem Inf Model

DOI

EISSN

1549-960X

Publication Date

September 24, 2018

Volume

58

Issue

9

Start / End Page

1725 / 1730

Location

United States

Related Subject Headings

  • Software
  • Small Molecule Libraries
  • Molecular Structure
  • Mitogen-Activated Protein Kinase Kinases
  • Medicinal & Biomolecular Chemistry
  • Drug Discovery
  • Drug Design
  • Databases, Factual
  • Computational Biology
  • 3407 Theoretical and computational chemistry