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The contribution of de novo coding mutations to meningomyelocele.

Publication ,  Journal Article
Ha, Y-JJ; Nisal, A; Tang, I; Lee, C; Jhamb, I; Wallace, C; Howarth, R; Schroeder, S; Vong, KI; Meave, N; Jiwani, F; Barrows, C; Lee, S ...
Published in: Nature
May 2025

Meningomyelocele (also known as spina bifida) is considered to be a genetically complex disease resulting from a failure of the neural tube to close. Individuals with meningomyelocele display neuromotor disability and frequent hydrocephalus, requiring ventricular shunting. A few genes have been proposed to contribute to disease susceptibility, but beyond that it remains unexplained1. We postulated that de novo mutations under purifying selection contribute to the risk of developing meningomyelocele2. Here we recruited a cohort of 851 meningomyelocele trios who required shunting at birth and 732 control trios, and found that de novo likely gene disruption or damaging missense mutations occurred in approximately 22.3% of subjects, with 28% of such variants estimated to contribute to disease risk. The 187 genes with damaging de novo mutations collectively define networks including actin cytoskeleton and microtubule-based processes, Netrin-1 signalling and chromatin-modifying enzymes. Gene validation demonstrated partial or complete loss of function, impaired signalling and defective closure of the neural tube in Xenopus embryos. Our results indicate that de novo mutations make key contributions to meningomyelocele risk, and highlight critical pathways required for neural tube closure in human embryogenesis.

Duke Scholars

Published In

Nature

DOI

EISSN

1476-4687

Publication Date

May 2025

Volume

641

Issue

8062

Start / End Page

419 / 426

Location

England

Related Subject Headings

  • Xenopus laevis
  • Signal Transduction
  • Netrin-1
  • Mutation, Missense
  • Mutation
  • Microtubules
  • Meningomyelocele
  • Male
  • Humans
  • Genetic Predisposition to Disease
 

Citation

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Ha, Y.-J., Nisal, A., Tang, I., Lee, C., Jhamb, I., Wallace, C., … Gleeson, J. G. (2025). The contribution of de novo coding mutations to meningomyelocele. Nature, 641(8062), 419–426. https://doi.org/10.1038/s41586-025-08676-x
Ha, Yoo-Jin Jiny, Ashna Nisal, Isaac Tang, Chanjae Lee, Ishani Jhamb, Cassidy Wallace, Robyn Howarth, et al. “The contribution of de novo coding mutations to meningomyelocele.Nature 641, no. 8062 (May 2025): 419–26. https://doi.org/10.1038/s41586-025-08676-x.
Ha Y-JJ, Nisal A, Tang I, Lee C, Jhamb I, Wallace C, et al. The contribution of de novo coding mutations to meningomyelocele. Nature. 2025 May;641(8062):419–26.
Ha, Yoo-Jin Jiny, et al. “The contribution of de novo coding mutations to meningomyelocele.Nature, vol. 641, no. 8062, May 2025, pp. 419–26. Pubmed, doi:10.1038/s41586-025-08676-x.
Ha Y-JJ, Nisal A, Tang I, Lee C, Jhamb I, Wallace C, Howarth R, Schroeder S, Vong KI, Meave N, Jiwani F, Barrows C, Lee S, Jiang N, Patel A, Bagga K, Banka N, Friedman L, Blanco FA, Yu S, Rhee S, Jeong HS, Plutzer I, Major MB, Benoit B, Poüs C, Heffner C, Kibar Z, Bot GM, Northrup H, Au KS, Strain M, Ashley-Koch AE, Finnell RH, Le JT, Meltzer HS, Araujo C, Machado HR, Stevenson RE, Yurrita A, Mumtaz S, Ahmed A, Khara MH, Mutchinick OM, Medina-Bereciartu JR, Hildebrandt F, Melikishvili G, Marwan AI, Capra V, Noureldeen MM, Salem AMS, Issa MY, Zaki MS, Xu L, Lee JE, Shin D, Alkelai A, Shuldiner AR, Kingsmore SF, Murray SA, Gee HY, Miller WT, Tolias KF, Wallingford JB, Spina Bifida Sequencing Consortium, Kim S, Gleeson JG. The contribution of de novo coding mutations to meningomyelocele. Nature. 2025 May;641(8062):419–426.
Journal cover image

Published In

Nature

DOI

EISSN

1476-4687

Publication Date

May 2025

Volume

641

Issue

8062

Start / End Page

419 / 426

Location

England

Related Subject Headings

  • Xenopus laevis
  • Signal Transduction
  • Netrin-1
  • Mutation, Missense
  • Mutation
  • Microtubules
  • Meningomyelocele
  • Male
  • Humans
  • Genetic Predisposition to Disease