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Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon.

Publication ,  Journal Article
Ribicoff, G; Garner, M; Pham, K; Althaus, KN; Cavender-Bares, J; Crowl, AA; Gray, S; Gugger, P; Hahn, M; Liao, S; Manos, PS; Mohn, RA ...
Published in: Molecular ecology
November 2025

Hybridization and interspecific gene flow play a substantial role in the evolution of plant taxa. The eastern North American white oak syngameon, a group of approximately 15 ecologically, morphologically and genomically distinguishable species, has long been recognised as a model system for studying introgressive hybridization in temperate trees. However, the prevalence, genomic context and environmental correlates of introgression in this system remain largely unknown. To assess introgression in the eastern North American white oak syngameon and population structure within the widespread Quercus macrocarpa, we conducted a rangewide survey of Q. macrocarpa and four sympatric eastern North American white oak species. Using a Hyb-Seq approach, we assembled a dataset of 3412 thinned single-nucleotide polymorphisms (SNPs) in 445 enriched target loci including 62 genes putatively associated with various ecological functions, as well as associated intronic regions and some off-target intergenic regions (not associated with the exons). Admixture analysis and hybrid class inference demonstrated species coherence despite hybridization and introgressive gene flow (due to backcrossing of F1s to one or both parents). Additionally, we recovered a genetic structure within Q. macrocarpa associated with latitude. Generalised linear mixed models (GLMMs) indicate that proximity to range edge predicts interspecific admixture, but rates of genetic differentiation do not appear to vary between putative functional gene classes. Our study suggests that gene flow between eastern North American white oak species may not be as rampant as previously assumed and that hybridization is most strongly predicted by proximity to a species' range margin.

Duke Scholars

Published In

Molecular ecology

DOI

EISSN

1365-294X

ISSN

0962-1083

Publication Date

November 2025

Volume

34

Issue

21

Start / End Page

e17822

Related Subject Headings

  • Quercus
  • Polymorphism, Single Nucleotide
  • Phylogeography
  • North America
  • Hybridization, Genetic
  • Genetics, Population
  • Genetic Introgression
  • Gene Flow
  • Evolutionary Biology
  • 31 Biological sciences
 

Citation

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Ribicoff, G., Garner, M., Pham, K., Althaus, K. N., Cavender-Bares, J., Crowl, A. A., … Hipp, A. L. (2025). Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon. Molecular Ecology, 34(21), e17822. https://doi.org/10.1111/mec.17822
Ribicoff, Gabe, Mira Garner, Kasey Pham, Kieran N. Althaus, Jeannine Cavender-Bares, Andrew A. Crowl, Samantha Gray, et al. “Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon.Molecular Ecology 34, no. 21 (November 2025): e17822. https://doi.org/10.1111/mec.17822.
Ribicoff G, Garner M, Pham K, Althaus KN, Cavender-Bares J, Crowl AA, et al. Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon. Molecular ecology. 2025 Nov;34(21):e17822.
Ribicoff, Gabe, et al. “Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon.Molecular Ecology, vol. 34, no. 21, Nov. 2025, p. e17822. Epmc, doi:10.1111/mec.17822.
Ribicoff G, Garner M, Pham K, Althaus KN, Cavender-Bares J, Crowl AA, Gray S, Gugger P, Hahn M, Liao S, Manos PS, Mohn RA, Pearse IS, Steichmann NR, Tuffin AL, Whittemore AT, Hipp AL. Introgression, Phylogeography, and Genomic Species Cohesion in the Eastern North American White Oak Syngameon. Molecular ecology. 2025 Nov;34(21):e17822.
Journal cover image

Published In

Molecular ecology

DOI

EISSN

1365-294X

ISSN

0962-1083

Publication Date

November 2025

Volume

34

Issue

21

Start / End Page

e17822

Related Subject Headings

  • Quercus
  • Polymorphism, Single Nucleotide
  • Phylogeography
  • North America
  • Hybridization, Genetic
  • Genetics, Population
  • Genetic Introgression
  • Gene Flow
  • Evolutionary Biology
  • 31 Biological sciences