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Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin.

Publication ,  Journal Article
Durack, J; Piceno, Y; Vuong, H; Fanelli, B; Good, DA; Hasan, NA; Dadlani, M; Weiss, L; Oh, J; Kostic, AD; Dawson, TL; Caballero-Arias, H; Colwell, RR
Published in: Nat Commun
July 1, 2025

The adult skin microbiome typically exhibits low microbial complexity, particularly on sebaceous sites, where lipophilic Cutibacterium and Malassezia spp. predominate. Current understanding of healthy skin microbiome is largely based on western, industrialized populations, with limited representation of diverse cultures and lifestyles. Here, we investigate the skin microbiome of a remote indigenous Yanomami community and reveal a complex microbial ecosystem comprising 115 previously unreported bacterial genomes. The Yanomami skin microbiome includes genera common to western populations alongside diverse environmental taxa that form multiplex interactions with the dominant eukaryote Malassezia globosa. Functional profiling indicates that this microbiome supports skin homeostasis by fortifying barrier integrity through lipid metabolism and acid production and mitigating oxidative stress. Longitudinal monitoring of western expeditioner' skin demonstrates acquisition of the Yanomami microbiome following Amazonian immersion and its subsequent loss upon return to an industrialized setting. These findings reveal that diverse, environmentally enriched microbiota may confer skin benefits that are overlooked in current models of healthy skin.

Duke Scholars

Published In

Nat Commun

DOI

EISSN

2041-1723

Publication Date

July 1, 2025

Volume

16

Issue

1

Start / End Page

5542

Location

England

Related Subject Headings

  • Skin Microbiome
  • Skin
  • RNA, Ribosomal, 16S
  • Microbiota
  • Male
  • Malassezia
  • Lipid Metabolism
  • Humans
  • Female
  • Bacteria
 

Citation

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Durack, J., Piceno, Y., Vuong, H., Fanelli, B., Good, D. A., Hasan, N. A., … Colwell, R. R. (2025). Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin. Nat Commun, 16(1), 5542. https://doi.org/10.1038/s41467-025-60131-7
Durack, Juliana, Yvette Piceno, Hoang Vuong, Brian Fanelli, David A. Good, Nur A. Hasan, Manoj Dadlani, et al. “Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin.Nat Commun 16, no. 1 (July 1, 2025): 5542. https://doi.org/10.1038/s41467-025-60131-7.
Durack J, Piceno Y, Vuong H, Fanelli B, Good DA, Hasan NA, et al. Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin. Nat Commun. 2025 Jul 1;16(1):5542.
Durack, Juliana, et al. “Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin.Nat Commun, vol. 16, no. 1, July 2025, p. 5542. Pubmed, doi:10.1038/s41467-025-60131-7.
Durack J, Piceno Y, Vuong H, Fanelli B, Good DA, Hasan NA, Dadlani M, Weiss L, Oh J, Kostic AD, Dawson TL, Caballero-Arias H, Colwell RR. Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin. Nat Commun. 2025 Jul 1;16(1):5542.

Published In

Nat Commun

DOI

EISSN

2041-1723

Publication Date

July 1, 2025

Volume

16

Issue

1

Start / End Page

5542

Location

England

Related Subject Headings

  • Skin Microbiome
  • Skin
  • RNA, Ribosomal, 16S
  • Microbiota
  • Male
  • Malassezia
  • Lipid Metabolism
  • Humans
  • Female
  • Bacteria