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RNA replication from the simian virus 5 antigenomic promoter requires three sequence-dependent elements separated by sequence-independent spacer regions.

Publication ,  Journal Article
Keller, MA; Murphy, SK; Parks, GD
Published in: J Virol
April 2001

We have previously shown for the paramyxovirus simian virus 5 (SV5) that a functional promoter for RNA replication requires proper spacing between two discontinuous elements: a 19-base segment at the 3' terminus (conserved region I [CRI]) and an 18-base internal region (CRII) that is contained within the coding region of the L protein gene. In the work described here, we have used a reverse-genetics system to determine if the 53-base segment between CRI and CRII contains additional sequence-specific signals required for optimal replication or if this segment functions solely as a sequence-independent spacer region. A series of copyback defective interfering minigenome analogs were constructed to contain substitutions of nonviral sequences in place of bases 21 to 72 of the antigenomic promoter, and the relative level of RNA replication was measured by Northern blot analysis. The results from our mutational analysis indicate that in addition to CRI and CRII, optimal replication from the SV5 antigenomic promoter requires a third sequence-dependent element located 51 to 66 bases from the 3' end of the RNA. Minigenome RNA replication was not affected by changes in the either the position of this element in relation to CRI and CRII or the predicted hexamer phase of NP encapsidation. Thus, optimal RNA replication from the SV5 antigenomic promoter requires three sequence-dependent elements, CRI, CRII and bases 51 to 66.

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Published In

J Virol

DOI

ISSN

0022-538X

Publication Date

April 2001

Volume

75

Issue

8

Start / End Page

3993 / 3998

Location

United States

Related Subject Headings

  • Virus Replication
  • Virology
  • Templates, Genetic
  • Simian immunodeficiency virus
  • Simian Immunodeficiency Virus
  • RNA, Viral
  • Promoter Regions, Genetic
  • Mutation
  • Molecular Sequence Data
  • Humans
 

Citation

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Keller, M. A., Murphy, S. K., & Parks, G. D. (2001). RNA replication from the simian virus 5 antigenomic promoter requires three sequence-dependent elements separated by sequence-independent spacer regions. J Virol, 75(8), 3993–3998. https://doi.org/10.1128/JVI.75.8.3993-3998.2001
Keller, M. A., S. K. Murphy, and G. D. Parks. “RNA replication from the simian virus 5 antigenomic promoter requires three sequence-dependent elements separated by sequence-independent spacer regions.J Virol 75, no. 8 (April 2001): 3993–98. https://doi.org/10.1128/JVI.75.8.3993-3998.2001.
Keller, M. A., et al. “RNA replication from the simian virus 5 antigenomic promoter requires three sequence-dependent elements separated by sequence-independent spacer regions.J Virol, vol. 75, no. 8, Apr. 2001, pp. 3993–98. Pubmed, doi:10.1128/JVI.75.8.3993-3998.2001.

Published In

J Virol

DOI

ISSN

0022-538X

Publication Date

April 2001

Volume

75

Issue

8

Start / End Page

3993 / 3998

Location

United States

Related Subject Headings

  • Virus Replication
  • Virology
  • Templates, Genetic
  • Simian immunodeficiency virus
  • Simian Immunodeficiency Virus
  • RNA, Viral
  • Promoter Regions, Genetic
  • Mutation
  • Molecular Sequence Data
  • Humans