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Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy.

Publication ,  Journal Article
Skala, MC; Palmer, GM; Vrotsos, KM; Gendron-Fitzpatrick, A; Ramanujam, N
Published in: Opt Express
June 11, 2007

We explored the use of diffuse reflectance spectroscopy in the ultraviolet-visible (UV-VIS) spectrum for the diagnosis of epithelial precancers and cancers in vivo. A physical model (Monte Carlo inverse model) and an empirical model (principal component analysis, (PCA)) based approach were compared for extracting diagnostic features from diffuse reflectance spectra measured in vivo from the dimethylbenz[alpha]anthracene-treated hamster cheek pouch model of oral carcinogenesis. These diagnostic features were input into a support vector machine algorithm to classify each tissue sample as normal (n=10) or neoplastic (dysplasia to carcinoma, n=10) and cross-validated using a leave one out method. There was a statistically significant decrease in the absorption and reduced scattering coefficient at 460 nm in neoplastic compared to normal tissues, and these two features provided 90% classification accuracy. The first two principal components extracted from PCA provided a classification accuracy of 95%. The first principal component was highly correlated with the wavelength-averaged reduced scattering coefficient. Although both methods show similar classification accuracy, the physical model provides insight into the physiological and structural features that discriminate between normal and neoplastic tissues and does not require a priori, a representative set of spectral data from which to derive the principal components.

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Published In

Opt Express

DOI

EISSN

1094-4087

Publication Date

June 11, 2007

Volume

15

Issue

12

Start / End Page

7863 / 7875

Location

United States

Related Subject Headings

  • Optics
  • 5102 Atomic, molecular and optical physics
  • 4009 Electronics, sensors and digital hardware
  • 4006 Communications engineering
  • 1005 Communications Technologies
  • 0906 Electrical and Electronic Engineering
  • 0205 Optical Physics
 

Citation

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Skala, M. C., Palmer, G. M., Vrotsos, K. M., Gendron-Fitzpatrick, A., & Ramanujam, N. (2007). Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy. Opt Express, 15(12), 7863–7875. https://doi.org/10.1364/OE.15.007863
Skala, Melissa C., Gregory M. Palmer, Kristin M. Vrotsos, Annette Gendron-Fitzpatrick, and Nirmala Ramanujam. “Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy.Opt Express 15, no. 12 (June 11, 2007): 7863–75. https://doi.org/10.1364/OE.15.007863.
Skala MC, Palmer GM, Vrotsos KM, Gendron-Fitzpatrick A, Ramanujam N. Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy. Opt Express. 2007 Jun 11;15(12):7863–75.
Skala, Melissa C., et al. “Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy.Opt Express, vol. 15, no. 12, June 2007, pp. 7863–75. Pubmed, doi:10.1364/OE.15.007863.
Skala MC, Palmer GM, Vrotsos KM, Gendron-Fitzpatrick A, Ramanujam N. Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy. Opt Express. 2007 Jun 11;15(12):7863–7875.
Journal cover image

Published In

Opt Express

DOI

EISSN

1094-4087

Publication Date

June 11, 2007

Volume

15

Issue

12

Start / End Page

7863 / 7875

Location

United States

Related Subject Headings

  • Optics
  • 5102 Atomic, molecular and optical physics
  • 4009 Electronics, sensors and digital hardware
  • 4006 Communications engineering
  • 1005 Communications Technologies
  • 0906 Electrical and Electronic Engineering
  • 0205 Optical Physics