Infrared Spectroscopic Observation of a G-C+ Hoogsteen Base Pair in the DNA:TATA-Box Binding Protein Complex Under Solution Conditions.
Journal Article (Journal Article)
Hoogsteen DNA base pairs (bps) are an alternative base pairing to canonical Watson-Crick bps and are thought to play important biochemical roles. Hoogsteen bps have been reported in a handful of X-ray structures of protein-DNA complexes. However, there are several examples of Hoogsteen bps in crystal structures that form Watson-Crick bps when examined under solution conditions. Furthermore, Hoogsteen bps can sometimes be difficult to resolve in DNA:protein complexes by X-ray crystallography due to ambiguous electron density and by solution-state NMR spectroscopy due to size limitations. Here, using infrared spectroscopy, we report the first direct solution-state observation of a Hoogsteen (G-C+ ) bp in a DNA:protein complex under solution conditions with specific application to DNA-bound TATA-box binding protein. These results support a previous assignment of a G-C+ Hoogsteen bp in the complex, and indicate that Hoogsteen bps do indeed exist under solution conditions in DNA:protein complexes.
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Duke Authors
Cited Authors
- Stelling, AL; Liu, AY; Zeng, W; Salinas, R; Schumacher, MA; Al-Hashimi, HM
Published Date
- August 26, 2019
Published In
Volume / Issue
- 58 / 35
Start / End Page
- 12010 - 12013
PubMed ID
- 31268220
Pubmed Central ID
- PMC6719543
Electronic International Standard Serial Number (EISSN)
- 1521-3773
Digital Object Identifier (DOI)
- 10.1002/anie.201902693
Language
- eng
Conference Location
- Germany