Journal ArticleProgress in biophysics and molecular biology · September 2018
Dorsal closure is a model cell sheet movement that occurs midway through Drosophila embryogenesis. A dorsal hole, filled with amnioserosa, closes through the dorsalward elongation of lateral epidermal cell sheets. Closure requires contributions from 5 dist ...
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Journal ArticlePhysical review. E · June 2018
We describe a mechanochemical and percolation cascade that augments myosin's regulatory network to tune cytoskeletal forces. Actomyosin forces collectively generate cytoskeletal forces during cell oscillations and ingression, which we quantify by elastic p ...
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Journal ArticleAnnual review of cell and developmental biology · October 2017
Dorsal closure is a key process during Drosophila morphogenesis that models cell sheet movements in chordates, including neural tube closure, palate formation, and wound healing. Closure occurs midway through embryogenesis and entails circumferential elong ...
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Journal ArticleMolecular biology of the cell · December 2016
Dorsal closure is an essential stage of Drosophila embryogenesis and is a powerful model system for morphogenesis, wound healing, and tissue biomechanics. During closure, two flanks of lateral epidermis close an eye-shaped dorsal opening that is filled wit ...
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Journal ArticleBiophysical journal · December 2015
Dorsal closure during Drosophila embryogenesis is an important model system for investigating the biomechanics of morphogenesis. During closure, two flanks of lateral epidermis (with actomyosin-rich purse strings near each leading edge) close an eye-shaped ...
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Journal ArticleMolecular biology of the cell · November 2014
Drosophila's dorsal closure provides an excellent model system with which to analyze biomechanical processes during morphogenesis. During native closure, the amnioserosa, flanked by two lateral epidermal sheets, forms an eye-shaped opening with canthi at e ...
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Journal ArticleBiophysical journal · March 2012
Programmed patterns of gene expression, cell-cell signaling, and cellular forces cause morphogenic movements during dorsal closure. We investigated the apical cell-shape changes that characterize amnioserosa cells during dorsal closure in Drosophila embryo ...
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Journal ArticleHFSP journal · December 2009
Dorsal closure, a stage of Drosophila development, is a model system for cell sheet morphogenesis and wound healing. During closure, two flanks of epidermal tissue progressively advance to reduce the area of the eye-shaped opening in the dorsal surface, wh ...
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Journal ArticleLaser and Photonics Reviews · November 5, 2009
Experimental evidence indicating the potential biomedical advantages of using a Mark-III Free-Electron Laser (FEL) for the ablation of soft tissue were first reported in 1994. Research progress since that time is reviewed, including: 1) successful human su ...
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Journal ArticleApplied Physics Letters · January 19, 2009
Free-electron laser irradiation can superheat tissue water, driving thermal vapor bubbles confined by tissue matrix and leading to mechanical tissue failure (ablation). Acoustic transients propagating from an ablation cavity were recorded with a polarizati ...
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Journal ArticlePhotochemistry and photobiology · January 2009
Neuromelanin isolated from the premotor cortex, cerebellum, putamen, globus pallidus and corpus callosum of the human brain is studied by scanning probe and photoelectron emission microscopies and the results are compared with previously published work on ...
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Journal ArticleScience (New York, N.Y.) · September 2008
Understanding cell morphogenesis during metazoan development requires knowledge of how cells and the extracellular matrix produce and respond to forces. We investigated how apoptosis, which remodels tissue by eliminating supernumerary cells, also contribut ...
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Journal ArticleHFSP journal · August 2008
Dorsal closure in Drosophila is a model system for cell sheet morphogenesis and wound healing. During closure two sheets of lateral epidermis move dorsally to close over the amnioserosa and form a continuous epidermis. Forces from the amnioserosa and actom ...
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Journal ArticleProgress in Biomedical Optics and Imaging - Proceedings of SPIE · April 21, 2008
We experimentally demonstrate that the acoustic transients propagating as a result Free-Electron Laser (FEL) ablation in brain tissue exhibit a strong FEL wavelength dependence. These acoustic transients were measured with a time-resolved, polarization qua ...
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Journal ArticlePhysical biology · April 2008
Dorsal closure is an essential stage of Drosophila development that is a model system for research in morphogenesis and biological physics. Dorsal closure involves an orchestrated interplay between gene expression and cell activities that produce shape cha ...
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Journal ArticleOpt Lett · June 1, 2007
A four-stage laser system was developed, emitting at a wavelength of 6450 nm with a 3-5 ns pulse duration, < or = 2 mJ pulse energy, and 1/2 Hz pulse repetition rate. The laser system successfully ablated rat brain tissue, where both the collateral damage ...
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Journal ArticlePhotochemistry and photobiology · May 2007
A technique for measuring the photoionization spectrum and the photoelectron emission threshold of a microscopic structured material is presented. The theoretical underpinning of the experiment and the accuracy of the measurements are discussed. The techni ...
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Journal ArticleBiophysical journal · April 2007
Tissue dynamics during dorsal closure, a stage of Drosophila development, provide a model system for cell sheet morphogenesis and wound healing. Dorsal closure is characterized by complex cell sheet movements, driven by multiple tissue specific forces, whi ...
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Journal Article28th International Free Electron Laser Conference, FEL 2006 · December 1, 2006
At the Free Electron Laser (FEL) Laboratory of Duke University, there is an S-band linac based Mark III FEL facility which can supply coherent FEL photon in the infrared wavelength range. To supply high quality electron beams and to have excellent pulse st ...
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Journal Article23rd International Linear Accelerator Conference, LINAC 2006 - Proceedings · December 1, 2006
At the Free Electron Laser (FEL) Laboratory of Duke University, there is an S-band linac based Mark III FEL facility which can supply coherent FEL photon in the infrared wavelength range. To supply high quality electron beams and to have excellent pulse st ...
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Journal Article · December 1, 2006
This chapter describes the use of ultraviolet (UV) laser microbeam interrogation strategies, combined with confocal microscopy, to investigate the developmental process of dorsal closure. Drosophila embryos that carry GFP-fusion transgenes are mounted to a ...
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Journal ArticlePhotochemistry and photobiology · November 2006
Melanosomes and lipofuscin were isolated from 14-, 59-, and 76-year-old, human retinal pigment epithelium specimens and examined. The morphological features of these samples were studied by scanning electron microscopy and atomic force microscopy, and the ...
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Journal ArticleProceedings of the National Academy of Sciences of the United States of America · October 2006
Neuromelanin (NM) isolated from the substantia nigra region of the human brain was studied by scanning probe and photoelectron emission microscopies. Atomic force microscopy reveals that NM granules are comprised of spherical structures with a diameter of ...
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Journal ArticlePhotochemistry and photobiology · May 2006
Free electron laser-photoelectron emission microscopy (FEL-PEEM), femtosecond absorption spectroscopy and electron paramagnetic resonance (EPR) measurements of oxygen photoconsumption were used to probe the threshold potential for ionization of eumelanosom ...
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Chapter · November 16, 2005
This chapter describes the use of ultraviolet (UV) laser microbeam interrogation strategies, combined with confocal microscopy, to investigate the developmental process of dorsal closure. Drosophila embryos that carry GFP-fusion transgenes are mounted to a ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · July 21, 2005
Representative examples of applications research based on Free-Electron Lasers are reviewed. Research highlights include: observation of absolute negative conductance in semiconductor superlattices using a terahertz Free-Electron Laser at the University of ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 2003
The temperature alterations in the absorption coefficients of water in cartilage and cornea under laser radiation of an IR Free Electron Laser (PEL) were studied for several wavelengths near 2.9 and 6.1 μm water absorption bands using a pulsed photo-therma ...
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Journal ArticleJournal of synchrotron radiation · September 2003
Although 6.45 micro m is not the strongest absorption band of biological tissues in the mid-infrared, a Mark-III free-electron laser (FEL) tuned to this wavelength can efficiently ablate tissue while minimizing collateral damage. A model has previously bee ...
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Journal ArticleReview of Scientific Instruments · July 1, 2003
A survey of biophysical and biomedical applications of free-electron lasers (FEL) was discussed. It was found that the midinfrared SCA FEL and UV FELs based on storage rings were useful for one- and two-color spectroscopic investigations of biophysical pro ...
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Journal ArticleApplied optics · May 2003
Like pure water, the water incorporated into cartilage and cornea tissue shows a pronounced dependence of the absorption coefficient on temperature. Alteration of the temperature by radiation with an IR free-electron laser was studied by use of a pulsed ph ...
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Journal ArticleScience (New York, N.Y.) · April 2003
We investigated the forces that connect the genetic program of development to morphogenesis in Drosophila. We focused on dorsal closure, a powerful model system for development and wound healing. We found that the bulk of progress toward closure is driven ...
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Journal ArticleJournal of biomedical optics · April 2003
Light scattering is used to monitor the dynamics and energy thresholds of laser-induced structural alterations in biopolymers due to irradiation by a free electron laser (FEL) in the infrared (IR) wavelength range 2.2 to 8.5 microm. Attenuated total reflec ...
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Journal ArticlePhysical review. E, Statistical, nonlinear, and soft matter physics · June 2002
We have theoretically investigated the role of thermal diffusion and chemical kinetics as a possible dynamic explanation for the preferential ablative properties of infrared radiation from a free-electron laser (FEL). The model is based on a laminar system ...
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Journal ArticleNuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment · May 1, 2002
We describe the commissioning of a novel two-color beamline at the Duke Free Electron Laser Laboratory, designed to perform time-resolved FTIR spectroscopy in a pump-probe scheme with sub-nanosecond resolution to measure dynamical processes with durations ...
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Journal ArticleProceedings of SPIE-The International Society for Optical Engineering · January 1, 2002
We present in some detail a theoretical model that provides a dynamical account for the experimentally observed ablative properties of an FEL tuned near 6.45 microns. The model is based on thermal diffusion and chemical kinetics in a system of alternating ...
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Journal ArticleProceedings of SPIE-The International Society for Optical Engineering · January 1, 2002
We have investigated the experimental consequences of two picosecond infrared lasers, both tuned to 6.45 μm and focused on ocular tissue. The exposure conditions were comparable, other than pulse repetition rate, where an optical parametric oscillator/ampl ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 2002
We describe the commissioning of a novel two-color beamline at the Duke Free Electron Laser Laboratory, designed to perform time-resolved FTIR spectroscopy in a pump-probe scheme with sub-nanosecond resolution to measure dynamical processes with durations ...
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Journal ArticleProceedings of the IEEE Particle Accelerator Conference · December 1, 2001
At the Duke Free Electron Laser (FEL) Laboratory, there are two FEL machines: the Mark III infrared FEL and the OK-4/Storage Ring, which produces UV and XUV laser beam as well as gamma rays via Compton backscattering. The recent status of Mark-III machine ...
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Journal ArticleProceedings of the IEEE Particle Accelerator Conference · December 1, 2001
Status of Mark III free electron laser and its upgrades were presented. An old high voltage source utilizing unregulated rectifier was replaced with power supplies manufactured by Maxwell to reduce optical power fluctuations. To implement faster change of ...
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Journal ArticleApplied optics · February 2001
The purpose of this research is to deliver free-electron-laser (FEL) pulses for intraocular microsurgery. The FEL at Vanderbilt University is tunable from 1.8 to 10.8 microm. To deliver the FEL beam we used a metallic-coated hollow-glass waveguide of 530-m ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 2000
The effect of temperature dependent shift of water absorption band, known for pure water, has been examined, for the first time, for tissue water, using the IR Free Electron Laser radiation. Cooling kinetics of cartilage and cornea irradiated was measured ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 2000
The Duke FEL Laboratory is a national and international users facility. We describe the current light source capabilities in the infrared, visible, ultraviolet, and Gamma rays. Plans are summarized for the development of two novel beamlines, one for UV-res ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 1999
The development of the capability for sub-nanosecond time-resolved infrared spectroscopy, combining the broad spectral bandwidth and other well-established advantages of Fourier transform interferometry with the high power, high repetition rate and wide tu ...
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Journal ArticlePhysical Review B - Condensed Matter and Materials Physics · January 1, 1999
The time-resolved infrared transmittance and reflectance of a melt induced by a 10 nsec optical-laser pulse has been observed in an undoped crystalline GaAs wafer. Picosecond pulsed, 2.86 GHz repetition rate, infrared radiation from a free-electron laser w ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 1999
We consider the denaturation process as an alteration in ordered organization of tissue structure and study the threshold and kinetics of laser-induced denaturation in cartilage and cornea undergoing irradiation from a free electron laser (FEL) in the wave ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 1998
The Free Electron Laser (FEL) at Vanderbilt University is tunable from 2 μm to 9 μm in the mid-infrared spectrum, which is capable of controlling predicted laser-tissue interaction by selecting a specific wavelength. However, delivery of this laser into th ...
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Journal ArticleNuclear Instruments and Methods in Physics Research, Section B: Beam Interactions with Materials and Atoms · September 2, 1998
Experimental evidence is presented for FEL induced photothermal protein chemistry and FEL modulation of microtubule dynamics. These findings are discussed in terms of previous investigations of FEL tissue ablation to explore the importance of the micropuls ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 1997
The purpose of this study is to investigate the healing process in cultured human cornea after infrared Free Electron Laser ablation. Fresh human cadaver cornea was ablated using the Free Electron Laser at the amide II band peak (6.45 micrometers). The cor ...
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Journal ArticleBiophysical journal · July 1997
We present an analytical, Green-function-based model for the electric potential of DNA in solution, treating the surrounding solvent with the Debye-Huckel approximation. The partial charge of each atom is accounted for by modeling DNA as linear distributio ...
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Journal ArticlePhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics · January 1, 1997
We have carried out simultaneous, time-dependent measurements of the free-electron-laser (FEL)-induced stress transients and ablation plume in gelatin, which serves as a model system for collagenous tissues. The Mark-III FEL is tunable in the mid-IR (2–10 ...
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Journal ArticlePhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics · January 1, 1997
Structural information in the local electric field produced by helical charge distributions, such as dissolved DNA, is revealed in a straightforward manner employing cylindrical coordinates. Comparison of structure factors derived in terms of cylindrical a ...
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Journal ArticleInvestigative Ophthalmology and Visual Science · 1997
Purpose. The Free Electron Laser (PEL) has a wavelength tunability range between 2 and 9 m in the mid-infrared spectrum. It is capable of producing controlled predictable laser-tissue interactions by selecting specific wavelengths. However, delivery of thi ...
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Journal ArticleInvestigative Ophthalmology and Visual Science · 1997
Purpose. To study the healing process in cultured human corneas after Qswitched Er:YAG laser ablation. Methods. Fresh human cadaver corneas within were ablated with a Q-switched Er:YAG laser at 2.94 m wavelength. (100ns, 1 Hz) The radiant exposure was 500 ...
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Journal ArticleConference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS · January 1, 1997
An application of hollow waveguide delivered infrared free electron laser (FEL) was investigated. The laser produced macro pulses of 5 μs duration at a repetition rate of 30 Hz. Each macro pulse consisted of a train of 1 ps micropulses repeating at 3 GHz. ...
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Journal ArticleIEEE Journal on Selected Topics in Quantum Electronics · December 1, 1996
The Vanderbilt free-electron laser (FEL) is a continuously tunable source of pulsed, mid-infrared radiation. FEL applications research has been underway for a decade. Recent experimental advances in FEL ablation of soft tissue indicate the potential for FE ...
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Journal ArticleInvestigative Ophthalmology and Visual Science · February 15, 1996
Purpose. To utilize the tuning capability of the Vanderbilt University Free Electron Laser (FEL) to examine ocular laser-tissue interactions with novel infrared wavelengths for potential improvement of ophthalmic laser surgical procedures. Methods. Human c ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 1996
Absorption spectra of 0.1 - 0.2 mm thick, dehydrated sections of human teeth were measured in the transmission mode with a Bruker FT-IR spectrometer from 2.5 - 20 μm. Absorption peaks for amide I, II and III, carbonate and phosphate were identified. Crater ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · January 1, 1996
A free electron laser (FEL) may be tuned to novel wavelengths to explore laser-tissue interactions for development or improvement of laser surgical procedures. This study investigated the effect of selected infrared wavelengths upon human cornea and optic ...
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Journal ArticleOptical Engineering · January 1, 1995
The operating parameters of the Vanderbilt free electron laser (FEL) are summarized. Effort are underway to develop compact FELs for medical applications. While further investigations of both the ablation mechanism, in particular the role of the pulse stru ...
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Journal ArticleReview of Scientific Instruments · December 1, 1994
A Pockels cell with an operating range of 2 to 10 μm has been designed, constructed, and tested for use with the Vanderbilt free electron laser. The Pockels cell can be continuously adjusted to switch out from 80 ns to the full 6 μs duration of the FEL mac ...
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Journal ArticleReview of Scientific Instruments · December 1, 1994
We describe a nitrogen-cooled array detector system based on the Thomson TH 7832A charge-coupled photodiode. Performance comparisons are made between this system and others based on two-dimensional CCDs. The TH 7832A compares favorably in resolution, spect ...
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Journal ArticleNature · September 1994
Efforts to ablate soft tissue with conventional lasers have been limited by collateral damage and by concern over potential photochemical effects. Motivated by the thermal-confinement model, past infrared investigations targeted the OH-stretch mode of wate ...
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ConferenceProceedings of SPIE - The International Society for Optical Engineering · August 17, 1994
A theoretical model is presented to account for the experimental observation that infrared tissue ablation is optimized by the use of wavelengths near the amide II band of proteins. The model recognizes the partitioned absorption of IR photons between prot ...
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ConferenceProceedings of SPIE - The International Society for Optical Engineering · July 27, 1994
Theoretical consideration of thermal lens effect due to linear and nonlinear opiical absorption is presented. Based on this model, Zscan technique, especially two-color Z-scan can be used to detect very low level of unpurities or defects in optical materia ...
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ConferenceProceedings of SPIE - The International Society for Optical Engineering · July 27, 1994
The Vanderbilt free-electron laser has been operational for several years. This extended collaboration has been investigating outstanding problems in biological physics and medical physics with several research goals in mind. Our most fundamental goal is t ...
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Journal ArticlePhysical Review E · January 1, 1994
We have developed a theoretical model of the electric potential and field for B-DNA in solution to investigate the persistence of structural information in the local field. A Green-function technique is used to account for the phosphate groups, the dominan ...
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Journal ArticlePhysical Review E · January 1, 1994
We present an analytical model, based on a Green-function technique, for the electric potential surrounding dissolved DNA which treats the full, discrete charge distribution of homopolymer B-DNA and the aqueous solvent as concentric, dielectric cylinders. ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 1993
The vibrational dynamics of O-H groups in fused silica have been examined by a time-resolved pump-probe technique using the Vanderbilt Free Electron Laser (FEL). We consider two effects, local heating and transient thermal lensing, which can influence meas ...
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ConferenceProceedings of SPIE - The International Society for Optical Engineering · August 7, 1992
Free-electron lasers (FELs) provide tunable, pulsed radiation in the infrared. Using the FEL as a pump beam, we are investigating the mechanisms for energy transfer between localized vibrational modes and between vibrational modes and lattice or phonon mod ...
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Journal ArticlePhysical Review A · January 1, 1992
We have measured the dielectric properties of concentrated solutions and gels (30 mg/ml) of random-sequenced DNA from E. coli in the 400-MHz26-GHz range. Two Debye-type relaxations are evident, one with a relaxation time near 9 ps and attributable to the c ...
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Journal ArticleLasers in surgery and medicine · January 1992
The broad background of scattered light observed in spectra of cell suspensions is reduced by factors of up to 20 by immersion refractometry allowing for improved spectroscopic determination of the absorption properties of cells in the 325-820 nm range. Re ...
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Journal ArticleProceedings of SPIE - The International Society for Optical Engineering · December 1, 1991
The newly commissioned Vanderbilt Free Electron Laser Center for Biomedical and Materials Research is a multidisciplinary users facility intended as an international resource. It provides extremely intense, continuously tunable, pulsed radiation in the mid ...
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Journal ArticlePhysical Review A · January 1, 1991
We have measured the low-frequency (<200 cm-1) Raman activity of dehydrated fibers and films of polynucleotides and random-sequenced nucleic acids. The spectra exhibit a pronounced, unresolved band in the range 10150 cm-1. A nonlinear least-squares algorit ...
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Journal ArticlePhysical Review A · January 1, 1990
In solving the secular equation of a one-dimensional infinite lattice model of poly(dA)-poly(dT), we obtain dispersion relations. [The notation poly(dA)-poly(dT) means that one strand contains only adenine (A) bases, and the other only thymine (T) bases.] ...
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Journal ArticlePhysical Review A · January 1, 1989
The Raman activity of low-frequency (20-300 cm-1) vibrational modes of dehydrated, oriented fibers of the sodium salts of poly(dA)poly(dT) and random sequenced DNA have been measured. Distinct bands near 60, 75-100, and 125-140 cm-1 are resolved in poly(dA ...
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Journal ArticlePhysical Review A · January 1, 1987
Far-infrared measurements (40500 cm-1) of vacuum-dried, free-standing, unoriented films of the polynucleotides poly(dA)poly(dT), poly(dA-dT)poly(dA-dT) , and poly(dG)poly(dC) and the ribonucleotide poly(rA)poly(rU) under various salting conditions are repo ...
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Journal ArticleBioelectrochemistry and Bioenergetics · January 1, 1986
We have been studying the microwave absorption characteristics of various forms of DNA. Our observations have demonstrated that long-chain DNA in saline buffer does not absorb microwaves significantly more than its solvent, but that specific short-length m ...
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Journal ArticleBioengineering, Proceedings of the Northeast Conference · December 1, 1985
The microwave absorption characteristics of various forms of DNA in the frequency range between 0. 1 and 12 GHz are analyzed. The results are summarized as follows: the microwave absorption of aqueous solutions of long-chain DNA (tens of thousands of base- ...
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Journal ArticleBiophysical journal · June 1985
The direct coupling of a microwave field to selected DNA molecules is demonstrated using standard dielectrometry. The absorption is resonant with a typical lifetime of 300 ps. Such a long lifetime is unexpected for DNA in aqueous solution at room temperatu ...
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Journal ArticlePhysical Review Letters · January 1, 1984
The resonant absorption of microwave energy by aqueous solutions containing DNA of known length is experimentally demonstrated. The resonances observed have relaxation times of hundreds of picoseconds. Absorption by linear and supercoiled circular DNA mole ...
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