Simon Gray Gregory | Scholars@Duke

Simon Gray Gregory
Professor in Neurosurgery

Dr. Gregory is a tenured Professor and Director of the Brain Tumor Omics Program (BTOP) in the Duke Department of Neurosurgery, the Vice Chair of Research in the Department of Neurology, and Director of the Molecular Genomics Core at the Duke Molecular Physiology Institute.

As a neurogenomicist, Dr. Gregory applies the experience gained from leading the sequencing of chromosome 1 for the Human Genome Project to elucidating the mechanisms underlying multi-factorial diseases using genetic, genomic, and epigenetic approaches. Dr. Gregory’s primary areas of research involve understanding the molecular processes associated with disease development and progression in brain tumors and Alzheimer’s disease, novel drug induced white matter injury repair in multiple sclerosis, and social and behavioral response to oxytocin treatment animal models of autism.

He is broadly regarded across Duke as a leader in the development of novel single cell and spatial molecular technologies towards understanding the pathogenic mechanisms of disease development. Dr. Gregory is also the Section Chair of Genomics and Epigenetics at the DMPI and Director of the Duke Center of Autoimmunity and MS in the Department of Neurology.

Current Research Interests

Brain tumors

Multiple Sclerosis

Autism

Alzheimer Disease

Application of single cell and spatial technologies to basic and translational research

Current Appointments & Affiliations

Professor in Neurosurgery, Neurosurgery, Clinical Science Departments 2022
Vice Chair for Research in the Department of Neurology, Neurology, Clinical Science Departments 2020
Professor in Molecular Genetics and Microbiology, Molecular Genetics and Microbiology, Basic Science Departments 2021
Professor in Neurology, Neurology, Clinical Science Departments 2022
Member of the Duke Cancer Institute, Duke Cancer Institute, Institutes and Centers 2003
Member of Duke Molecular Physiology Institute, Duke Molecular Physiology Institute, Duke Molecular Physiology Institute 2013

Contact Information

300 N. Duke Street, Room 51-102, Duke Molecular Physiology Institute, Durham, NC 27701
Duke Box 104775, Durham, NC 27701
simon.gregory@duke.edu (919) 684-0726
Gregory lab page
Gregory_Google scholar
LinkedIn page

Background
Education, Training, & Certifications
- Ph.D., Open University, Milton Keynes (United Kingdom) 2003
- B.A.Sc., RMIT University (Australia) 1990
Previous Appointments & Affiliations
- Professor in Neurology, Neurology, MS & Neuroimmunology, Neurology 2020 - 2022
- Research Professor in Molecular Genetics and Microbiology, Molecular Genetics and Microbiology, Basic Science Departments 2016 - 2021
- Professor in Neurology, Neurology, MS & Neuroimmunology, Neurology 2016 - 2020
- Professor - TrackV of Medicine, Medicine, Medical Genetics, Medicine 2016
- Associate Research Professor in Molecular Genetics and Microbiology, Molecular Genetics and Microbiology, Basic Science Departments 2010 - 2016
- Associate Professor in Medicine, Medicine, Medical Genetics, Medicine 2013 - 2016
- Associate Professor in Medicine, Duke Molecular Physiology Institute, Duke Molecular Physiology Institute 2010 - 2013
- Assistant Professor in Medicine, Duke Molecular Physiology Institute, Duke Molecular Physiology Institute 2006 - 2010
- Assistant Research Professor in Medicine, Duke Molecular Physiology Institute, Duke Molecular Physiology Institute 2004 - 2006
Academic Positions Outside Duke
- Adjunct Graduate Faculty, Department of Biological and Biomedical Sciences, North Carolina Central University. 2018 - 2019
Recognition
In the News
- MAR 20, 2022
  
  Alzheimer's Research: Unlocking the Secrets of the Brain
- MAR 23, 2017 Duke Health News
  
  New Gene Interaction Appears to be Associated with Increased MS Risk
- NOV 7, 2016
  
  Mapping the Biology of Drug-Resistant Multiple Sclerosis
- JUN 26, 2015
  
  Allen Song Named Interim Director of Brain Institute
- JUN 11, 2015 NPR
  
  Simon Gregory quoted: More evidence that parents' ages could influence autism risk
- JUN 11, 2015 NPR
  
  Simon Gregory quoted: More evidence that parents' ages could influence autism risk
- NOV 21, 2014
  
  Simon Gregory Inducted to MS Hall of Fame
- SEP 25, 2013 WRAL
  
  Community comes together for 9-year-old with rare condition
- SEP 25, 2013 WRAL
  
  Community comes together for 9-year-old with rare condition
- AUG 13, 2013 CNN
  
  Autism linked to induced or augmented labor, study says
- AUG 13, 2013 CNN
  
  Autism linked to induced or augmented labor, study says
- AUG 13, 2013 BBC News
  
  Induced labor 'linked to autism'
- AUG 13, 2013
  
  Inducing and Augmenting Labor May be Associated with Increased Risk of Autism
- AUG 13, 2013 Wall Street Journal
  
  Study finds link between induced labor and autism diagnoses
Awards & Honors
Research
Selected Grants
- Reviving cancer immune surveillance with CD4 T cell help awarded by National Institutes of Health 2022 - 2025
- Mechanisms of oxysterol-induced oligodendrogenesis awarded by National Institutes of Health 2019 - 2024
- VA agreement - 10x Genomics - 48 samples - Molecular Genomics Core & the GCB Sequencing Core awarded by Durham Veterans Affairs Medical Center 2022 - 2023
- Biomarkers predicting response to eculizumab in myasthenia gravis (fed) awarded by The George Washington University 2021 - 2023
- Is Low Tumor Mutational Burden Predictive of Response to Oncolytic Polio Virus Therapy in Recurrent Glioblastoma? awarded by National Institutes of Health 2019 - 2022
- Bioinformatics and Computational Biology Training Program awarded by National Institutes of Health 2005 - 2021
- Metabolic Pathways Of Pathogenic Th17 Cells In Myasthenia Gravis awarded by Myasthenia Gravis Foundation 2020 - 2021
- Networks of nutritional stress in human pancreatic islet cells awarded by Merck Sharp & Dohme 2018 - 2020
- Genetics Training Grant awarded by National Institutes of Health 1979 - 2020
- Development of Circulating Molecular Predictors of Chemotherapy and Novel Hormonal Therapy Benefit in Men with Metastatic Castration Resistant Prostate Cancer (mCRPC) awarded by Prostate Cancer Foundation 2014 - 2020
- Specific and Pervasive Symptoms in Adults with Multiple Sclerosis Using the MURDOCK-MS Dataset: A Secondary Analysis awarded by National Institutes of Health 2017 - 2020
- Development of a Prognostic Marker for Lung Cancer Using Analysis of Tumor Evolution awarded by Department of Defense 2015 - 2019
- Systems Biology Approaches for Predicting Cardiometabolic Risk in Persons Living with HIV awarded by National Institutes of Health 2015 - 2018
- Identifying Genetic and Epigenetic Signatures of Treatment Response to Oxytocin in Humans and Mice awarded by Autism Speaks 2016 - 2018
- Study of Oxytocin in Autism to Improve Reciprocal Social Behaviors (SOARS-B) awarded by National Institutes of Health 2012 - 2018
- Integration of CT imaging features with cell-free plasma DNA as biomarkers for early lung cancer detection in patients with indeterminate pulmonary nodules awarded by Society of Thoracic Radiology 2016 - 2018
- SRA for Stephanie Arvai awarded by University of Texas Medical Branch 2016
- Research Training In Neuro-Oncology awarded by National Institutes of Health 1998 - 2016
- Metabolomic Quantitative Trait Locus (mQTL) Genetic Mapping in Human CVD awarded by National Institutes of Health 2009 - 2016
- A role for pathogen-induced IL-10 production in susceptibility to MS awarded by National Multiple Sclerosis Society 2014 - 2015
- Study of Oxytocin in Autism to improve Reciprocal Social Behaviors (SOARS-B) awarded by University of North Carolina - Chapel Hill 2012 - 2015
- Defining the Functional Role of a Novel MS Susceptibility Gene, IL7R alpha chain awarded by National Institutes of Health 2009 - 2015
- Linkage and candidate gene analysis in non-syndromic Chiari type I awarded by National Institutes of Health 2009 - 2015
- Study of Genetic Basis of Fuchs Corneal Dystrophy awarded by National Institutes of Health 2007 - 2013
- Genetic Mediators of Metabolic Cardiovascular Disease Risk awarded by National Institutes of Health 2009 - 2012
- Candidate Genes and Longitudinal Disability Phenotypes awarded by National Institutes of Health 2006 - 2012
- Molecular mechanisms of altered calcium sensing in human parathyroid disease awarded by National Institutes of Health 2010 - 2012
- Research Training In Neuro-Oncology awarded by National Institutes of Health 2005 - 2010
- Hereditary basis of neural tube defects awarded by National Institutes of Health 1999 - 2010
- Genotyping - Illumina Methylation Analysis of DNA Samples awarded by National Institute of Environmental Health Sciences 2008 - 2010
- Genotyping - Methlylation Infinium Chips awarded by National Institute of Environmental Health Sciences 2008 - 2010
- Molecular Dissection of Cardiovascular Disease: From Genes to Models to Function awarded by National Institutes of Health 2007 - 2009
- GENECARD: Gene identification in Early-Onset CAD awarded by National Institutes of Health 2003 - 2009
- Molecular Genetics of Coronary Artery Disease awarded by National Institutes of Health 2006 - 2007
- High-Resolution CGH Characterization of Brain Tumors awarded by National Institutes of Health 2004 - 2006
External Relationships
- 10x Genomics Inc.
- Autoimmunity Biologic Solutions, Inc
- Cellarity Inc.
- David H Murdock Research Institute
- Tellus Therapeutics
Publications & Artistic Works
Selected Publications
- Academic Articles
  - Siecinski, Stephen K., Stephanie N. Giamberardino, Marina Spanos, Annalise C. Hauser, Jason R. Gibson, Tara Chandrasekhar, Maria Del Pilar Trelles, et al. “Genetic and epigenetic signatures associated with plasma oxytocin levels in children and adolescents with autism spectrum disorder.” Autism Res, January 7, 2023. https://doi.org/10.1002/aur.2884.
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  - Schott, Benjamin H., Liuyang Wang, Xinyu Zhu, Alfred T. Harding, Emily R. Ko, Jeffrey S. Bourgeois, Erica J. Washington, et al. “Single-cell genome-wide association reveals that a nonsynonymous variant in ERAP1 confers increased susceptibility to influenza virus.” Cell Genom 2, no. 11 (November 9, 2022). https://doi.org/10.1016/j.xgen.2022.100207.
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  - Leuthner, Tess C., Laura Benzing, Brendan F. Kohrn, Christina M. Bergemann, Michael J. Hipp, Kathleen A. Hershberger, Danielle F. Mello, et al. “Resistance of mitochondrial DNA to cadmium and Aflatoxin B1 damage-induced germline mutation accumulation in C. elegans.” Nucleic Acids Res 50, no. 15 (August 26, 2022): 8626–42. https://doi.org/10.1093/nar/gkac666.
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  - Low, Justin T., Vidyalakshmi Chandramohan, Michelle L. Bowie, Michael C. Brown, Matthew S. Waitkus, Aaron Briley, Kevin Stevenson, et al. “Epigenetic STING silencing is developmentally conserved in gliomas and can be rescued by methyltransferase inhibition.” Cancer Cell 40, no. 5 (May 9, 2022): 439–40. https://doi.org/10.1016/j.ccell.2022.04.009.
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  - Dungan, Jennifer R., Xue Qin, Simon G. Gregory, Rhonda Cooper-Dehoff, Julio D. Duarte, Huaizhen Qin, Martha Gulati, et al. “Sex-dimorphic gene effects on survival outcomes in people with coronary artery disease.” Am Heart J Plus 17 (May 2022). https://doi.org/10.1016/j.ahjo.2022.100152.
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  - Allen, Joseph P., Joshua S. Danoff, Meghan A. Costello, Emily L. Loeb, Alida A. Davis, Gabrielle L. Hunt, Simon G. Gregory, Stephanie N. Giamberardino, and Jessica J. Connelly. “Adolescent peer struggles predict accelerated epigenetic aging in midlife.” Dev Psychopathol, April 5, 2022, 1–14. https://doi.org/10.1017/S0954579422000153.
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  - Allen, Joseph P., Joshua S. Danoff, Meghan A. Costello, Gabrielle L. Hunt, Amanda F. Hellwig, Kathleen M. Krol, Simon G. Gregory, Stephanie N. Giamberardino, Karen Sugden, and Jessica J. Connelly. “Lifetime marijuana use and epigenetic age acceleration: A 17-year prospective examination.” Drug Alcohol Depend 233 (April 1, 2022): 109363. https://doi.org/10.1016/j.drugalcdep.2022.109363.
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  - Kadur Lakshminarasimha Murthy, Preetish, Vishwaraj Sontake, Aleksandra Tata, Yoshihiko Kobayashi, Lauren Macadlo, Kenichi Okuda, Ansley S. Conchola, et al. “Human distal lung maps and lineage hierarchies reveal a bipotent progenitor.” Nature 604, no. 7904 (April 2022): 111–19. https://doi.org/10.1038/s41586-022-04541-3.
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  - Jain, Vaibhav, Wen-Hsuan Yang, Jianli Wu, John D. Roback, Simon G. Gregory, and Jen-Tsan Chi. “Single Cell RNA-Seq Analysis of Human Red Cells.” Front Physiol 13 (2022): 828700. https://doi.org/10.3389/fphys.2022.828700.
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  - SoRelle, Elliott D., Joanne Dai, Emmanuela N. Bonglack, Emma M. Heckenberg, Jeffrey Y. Zhou, Stephanie N. Giamberardino, Jeffrey A. Bailey, Simon G. Gregory, Cliburn Chan, and Micah A. Luftig. “Correction: Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host-pathogen dynamics in lymphoblastoid cell lines.” Elife 10 (November 11, 2021). https://doi.org/10.7554/eLife.75422.
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  - Sikich, Linmarie, Alexander Kolevzon, Bryan H. King, Christopher J. McDougle, Kevin B. Sanders, Soo-Jeong Kim, Marina Spanos, et al. “Intranasal Oxytocin in Children and Adolescents with Autism Spectrum Disorder.” N Engl J Med 385, no. 16 (October 14, 2021): 1462–73. https://doi.org/10.1056/NEJMoa2103583.
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  - Brown, Landon C., Susan Halabi, Joseph D. Schonhoft, Qian Yang, Jun Luo, David M. Nanus, Paraskevi Giannakakou, et al. “Circulating Tumor Cell Chromosomal Instability and Neuroendocrine Phenotype by Immunomorphology and Poor Outcomes in Men with mCRPC Treated with Abiraterone or Enzalutamide.” Clin Cancer Res 27, no. 14 (July 15, 2021): 4077–88. https://doi.org/10.1158/1078-0432.CCR-20-3471.
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  - Giarraputo, James, Stephanie Giamberardino, Stephanie Arvai, Sarah Maichle, Christopher Eckstein, L Kristin Newby, and Simon Gregory. “Profiling serum neurofilament light chain and glial fibrillary acidic protein in primary progressive multiple sclerosis.” J Neuroimmunol 354 (May 15, 2021): 577541. https://doi.org/10.1016/j.jneuroim.2021.577541.
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  - Cronan, Mark R., Erika J. Hughes, W Jared Brewer, Gopinath Viswanathan, Emily G. Hunt, Bindu Singh, Smriti Mehra, et al. “A non-canonical type 2 immune response coordinates tuberculous granuloma formation and epithelialization.” Cell 184, no. 7 (April 1, 2021): 1757-1774.e14. https://doi.org/10.1016/j.cell.2021.02.046.
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  - Schott, Geraldine, Gaddiel Galarza-Muñoz, Noe Trevino, Xiaoting Chen, Matthew Weirauch, Simon G. Gregory, Shelton S. Bradrick, and Mariano A. Garcia-Blanco. “U2AF2 binds IL7R exon 6 ectopically and represses its inclusion.” Rna 27, no. 5 (February 10, 2021): 571–83. https://doi.org/10.1261/rna.078279.120.
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  - Danoff, Joshua S., Kelly L. Wroblewski, Andrew J. Graves, Graham C. Quinn, Allison M. Perkeybile, William M. Kenkel, Travis S. Lillard, et al. “Genetic, epigenetic, and environmental factors controlling oxytocin receptor gene expression.” Clin Epigenetics 13, no. 1 (January 30, 2021): 23. https://doi.org/10.1186/s13148-021-01017-5.
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  - SoRelle, Elliott D., Joanne Dai, Emmanuela N. Bonglack, Emma M. Heckenberg, Jeffrey Y. Zhou, Stephanie N. Giamberardino, Jeffrey A. Bailey, Simon G. Gregory, Cliburn Chan, and Micah A. Luftig. “Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host-pathogen dynamics in lymphoblastoid cell lines.” Elife 10 (January 27, 2021). https://doi.org/10.7554/eLife.62586.
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  - Mariottoni, Paula, Simon W. Jiang, Courtney A. Prestwood, Vaibhav Jain, Jutamas Suwanpradid, Melodi Javid Whitley, Margaret Coates, et al. “Single-Cell RNA Sequencing Reveals Cellular and Transcriptional Changes Associated With M1 Macrophage Polarization in Hidradenitis Suppurativa.” Front Med (Lausanne) 8 (2021): 665873. https://doi.org/10.3389/fmed.2021.665873.
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  - Chen, Tianyi, Sehhoon Oh, Simon Gregory, Xiling Shen, and Anna Mae Diehl. “Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration.” Jci Insight 5, no. 22 (November 19, 2020). https://doi.org/10.1172/jci.insight.141024.
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  - Spanos, Marina, Tara Chandrasekhar, Soo-Jeong Kim, Robert M. Hamer, Bryan H. King, Christopher J. McDougle, Kevin B. Sanders, et al. “Rationale, design, and methods of the Autism Centers of Excellence (ACE) network Study of Oxytocin in Autism to improve Reciprocal Social Behaviors (SOARS-B).” Contemp Clin Trials 98 (November 2020): 106103. https://doi.org/10.1016/j.cct.2020.106103.
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  - Baht, Gurpreet S., Akshay Bareja, David E. Lee, Rajesh R. Rao, Rong Huang, Janet L. Huebner, David B. Bartlett, et al. “Author Correction: Meteorin-like facilitates skeletal muscle repair through a Stat3/IGF-1 mechanism.” Nat Metab 2, no. 8 (August 2020): 794. https://doi.org/10.1038/s42255-020-0257-y.
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  - Chou, Ching-Heng, Vaibhav Jain, Jason Gibson, David E. Attarian, Collin A. Haraden, Christopher B. Yohn, Remi-Martin Laberge, Simon Gregory, and Virginia B. Kraus. “Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis.” Sci Rep 10, no. 1 (July 2, 2020): 10868. https://doi.org/10.1038/s41598-020-67730-y.
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  - Becker, Kristian C., Lydia Coulter Kwee, Megan L. Neely, Elizabeth Grass, Joseph A. Jakubowski, Keith A. A. Fox, Harvey D. White, et al. “Circulating MicroRNA Profiling in Non-ST Elevated Coronary Artery Syndrome Highlights Genomic Associations with Serial Platelet Reactivity Measurements.” Sci Rep 10, no. 1 (April 10, 2020): 6169. https://doi.org/10.1038/s41598-020-63263-6.
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  - Gupta, Santosh, Daniel H. Hovelson, Gabor Kemeny, Susan Halabi, Wen-Chi Foo, Monika Anand, Jason A. Somarelli, et al. “Discordant and heterogeneous clinically relevant genomic alterations in circulating tumor cells vs plasma DNA from men with metastatic castration resistant prostate cancer.” Genes Chromosomes Cancer 59, no. 4 (April 2020): 225–39. https://doi.org/10.1002/gcc.22824.
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  - Baht, Gurpreet S., Akshay Bareja, David E. Lee, Rajesh R. Rao, Rong Huang, Janet L. Huebner, David B. Bartlett, et al. “Meteorin-like facilitates skeletal muscle repair through a Stat3/IGF-1 mechanism.” Nat Metab 2, no. 3 (March 2020): 278–89. https://doi.org/10.1038/s42255-020-0184-y.
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  - Jewell, Mark L., Jason R. Gibson, Cynthia D. Guy, Jeongeun Hyun, Kuo Du, Seh-Hoon Oh, Richard T. Premont, et al. “Single-Cell RNA Sequencing Identifies Yes-Associated Protein 1-Dependent Hepatic Mesothelial Progenitors in Fibrolamellar Carcinoma.” Am J Pathol 190, no. 1 (January 2020): 93–107. https://doi.org/10.1016/j.ajpath.2019.09.018.
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  - Yahara, Yasuhito, Tomasa Barrientos, Yuning J. Tang, Vijitha Puviindran, Puviindran Nadesan, Hongyuan Zhang, Jason R. Gibson, et al. “Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair.” Nat Cell Biol 22, no. 1 (January 2020): 49–59. https://doi.org/10.1038/s41556-019-0437-8.
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  - Abdulrahim, Jawan W., Lydia Coulter Kwee, Elizabeth Grass, Ilene C. Siegler, Redford Williams, Ravi Karra, William E. Kraus, Simon G. Gregory, and Svati H. Shah. “Epigenome-Wide Association Study for All-Cause Mortality in a Cardiovascular Cohort Identifies Differential Methylation in Castor Zinc Finger 1 (CASZ1).” J Am Heart Assoc 8, no. 21 (November 5, 2019): e013228. https://doi.org/10.1161/JAHA.119.013228.
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  - Kwee, Lydia Coulter, Megan L. Neely, Elizabeth Grass, Simon G. Gregory, Matthew T. Roe, E Magnus Ohman, Keith A. A. Fox, et al. “Associations of osteopontin and NT-proBNP with circulating miRNA levels in acute coronary syndrome.” Physiol Genomics 51, no. 10 (October 1, 2019): 506–15. https://doi.org/10.1152/physiolgenomics.00033.2019.
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  - Andersen, S. L., F. B. S. Briggs, J. H. Winnike, Y. Natanzon, S. Maichle, K. J. Knagge, L. K. Newby, and S. G. Gregory. “Metabolome-based signature of disease pathology in MS.” Mult Scler Relat Disord 31 (June 2019): 12–21. https://doi.org/10.1016/j.msard.2019.03.006.
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  - Kousa, Youssef A., Huiping Zhu, Walid D. Fakhouri, Yunping Lei, Akira Kinoshita, Raeuf R. Roushangar, Nicole K. Patel, et al. “The TFAP2A-IRF6-GRHL3 genetic pathway is conserved in neurulation.” Hum Mol Genet 28, no. 10 (May 15, 2019): 1726–37. https://doi.org/10.1093/hmg/ddz010.
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  - Armstrong, Andrew J., Susan Halabi, Jun Luo, David M. Nanus, Paraskevi Giannakakou, Russell Z. Szmulewitz, Daniel C. Danila, et al. “Prospective Multicenter Validation of Androgen Receptor Splice Variant 7 and Hormone Therapy Resistance in High-Risk Castration-Resistant Prostate Cancer: The PROPHECY Study.” J Clin Oncol 37, no. 13 (May 1, 2019): 1120–29. https://doi.org/10.1200/JCO.18.01731.
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  - Armstrong, Andrew J., Santosh Gupta, Patrick Healy, Gabor Kemeny, Beth Leith, Michael R. Zalutsky, Charles Spritzer, et al. “Pharmacodynamic study of radium-223 in men with bone metastatic castration resistant prostate cancer.” Plos One 14, no. 5 (January 2019): e0216934. https://doi.org/10.1371/journal.pone.0216934.
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  - Dhingra, Radhika, Lydia Coulter Kwee, David Diaz-Sanchez, Robert B. Devlin, Wayne Cascio, Elizabeth R. Hauser, Simon Gregory, et al. “Evaluating DNA methylation age on the Illumina MethylationEPIC Bead Chip.” Plos One 14, no. 4 (2019): e0207834. https://doi.org/10.1371/journal.pone.0207834.
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  - Perkeybile, Allison M., C Sue Carter, Kelly L. Wroblewski, Meghan H. Puglia, William M. Kenkel, Travis S. Lillard, Themistoclis Karaoli, et al. “Early nurture epigenetically tunes the oxytocin receptor.” Psychoneuroendocrinology 99 (January 2019): 128–36. https://doi.org/10.1016/j.psyneuen.2018.08.037.
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  - Tailor, Tina D., Xiayu Rao, Michael J. Campa, Jing Wang, Simon G. Gregory, and Edward F. Patz. “Whole Exome Sequencing of Cell-Free DNA for Early Lung Cancer: A Pilot Study to Differentiate Benign From Malignant CT-Detected Pulmonary Lesions.” Front Oncol 9 (2019): 317. https://doi.org/10.3389/fonc.2019.00317.
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  - Towers, Aaron J., Martine W. Tremblay, Leeyup Chung, Xin-Lei Li, Alexandra L. Bey, Wenhao Zhang, Xinyu Cao, et al. “Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.” Jci Insight 3, no. 23 (December 6, 2018). https://doi.org/10.1172/jci.insight.120592.
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  - Ward-Caviness, Cavin K., William E. Kraus, Colette Blach, Carol S. Haynes, Elaine Dowdy, Marie Lynn Miranda, Robert Devlin, et al. “Associations Between Residential Proximity to Traffic and Vascular Disease in a Cardiac Catheterization Cohort.” Arterioscler Thromb Vasc Biol 38, no. 1 (January 2018): 275–82. https://doi.org/10.1161/ATVBAHA.117.310003.
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  - Kanayama, Masashi, Shengjie Xu, Keiko Danzaki, Jason R. Gibson, Makoto Inoue, Simon G. Gregory, and Mari L. Shinohara. “Skewing of the population balance of lymphoid and myeloid cells by secreted and intracellular osteopontin.” Nat Immunol 18, no. 9 (September 2017): 973–84. https://doi.org/10.1038/ni.3791.
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  - Wang, Alice, Lydia Coulter Kwee, Elizabeth Grass, Megan L. Neely, Simon G. Gregory, Keith A. A. Fox, Paul W. Armstrong, et al. “Whole blood sequencing reveals circulating microRNA associations with high-risk traits in non-ST-segment elevation acute coronary syndrome.” Atherosclerosis 261 (June 2017): 19–25. https://doi.org/10.1016/j.atherosclerosis.2017.03.041.
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  - Galarza-Muñoz, Gaddiel, Farren B. S. Briggs, Irina Evsyukova, Geraldine Schott-Lerner, Edward M. Kennedy, Tinashe Nyanhete, Liuyang Wang, et al. “Human Epistatic Interaction Controls IL7R Splicing and Increases Multiple Sclerosis Risk.” Cell 169, no. 1 (March 23, 2017): 72-84.e13. https://doi.org/10.1016/j.cell.2017.03.007.
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  - Afshari, Natalie A., Robert P. Igo, Nathan J. Morris, Dwight Stambolian, Shiwani Sharma, V Lakshmi Pulagam, Steven Dunn, et al. “Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.” Nature Communications 8 (March 2017): 14898. https://doi.org/10.1038/ncomms14898.
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  - Gupta, Santosh, Jing Li, Gabor Kemeny, Rhonda L. Bitting, Joshua Beaver, Jason A. Somarelli, Kathryn E. Ware, Simon Gregory, and Andrew J. Armstrong. “Whole Genomic Copy Number Alterations in Circulating Tumor Cells from Men with Abiraterone or Enzalutamide-Resistant Metastatic Castration-Resistant Prostate Cancer.” Clin Cancer Res 23, no. 5 (March 1, 2017): 1346–57. https://doi.org/10.1158/1078-0432.CCR-16-1211.
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  - Ward-Caviness, Cavin K., Lucas M. Neas, Colette Blach, Carol S. Haynes, Karen LaRocque-Abramson, Elizabeth Grass, Z Elaine Dowdy, et al. “A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.” Plos One 12, no. 3 (2017): e0173880. https://doi.org/10.1371/journal.pone.0173880.
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  - Inoue, Makoto, Po-Han Chen, Stephen Siecinski, Qi-Jing Li, Chunlei Liu, Lawrence Steinman, Simon G. Gregory, Eric Benner, and Mari L. Shinohara. “An interferon-β-resistant and NLRP3 inflammasome-independent subtype of EAE with neuronal damage.” Nat Neurosci 19, no. 12 (December 2016): 1599–1609. https://doi.org/10.1038/nn.4421.
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  - Sullivan, Lori L., Kristin A. Maloney, Aaron J. Towers, Simon G. Gregory, and Beth A. Sullivan. “Human centromere repositioning within euchromatin after partial chromosome deletion.” Chromosome Res 24, no. 4 (December 2016): 451–66. https://doi.org/10.1007/s10577-016-9536-6.
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  - Zeng, Yi, Huashuai Chen, Ting Ni, Rongping Ruan, Chao Nie, Xiaomin Liu, Lei Feng, et al. “Interaction Between the FOXO1A-209 Genotype and Tea Drinking Is Significantly Associated with Reduced Mortality at Advanced Ages.” Rejuvenation Res 19, no. 3 (June 2016): 195–203. https://doi.org/10.1089/rej.2015.1737.
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  - Zeng, Yi, Chao Nie, Junxia Min, Xiaomin Liu, Mengmeng Li, Huashuai Chen, Hanshi Xu, et al. “Novel loci and pathways significantly associated with longevity.” Sci Rep 6 (February 25, 2016): 21243. https://doi.org/10.1038/srep21243.
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  - Dungan, Jennifer R., Xuejun Qin, Benjamin D. Horne, John F. Carlquist, Abanish Singh, Melissa Hurdle, Elizabeth Grass, et al. “Case-Only Survival Analysis Reveals Unique Effects of Genotype, Sex, and Coronary Disease Severity on Survivorship.” Plos One 11, no. 5 (2016): e0154856. https://doi.org/10.1371/journal.pone.0154856.
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  - Ward-Caviness, Cavin K., Lucas M. Neas, Colette Blach, Carol S. Haynes, Karen LaRocque-Abramson, Elizabeth Grass, Elaine Dowdy, et al. “Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.” Plos One 11, no. 4 (2016): e0152670. https://doi.org/10.1371/journal.pone.0152670.
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  - Riley, Ronald T., Olga Torres, Jorge Matute, Simon G. Gregory, Allison E. Ashley-Koch, Jency L. Showker, Trevor Mitchell, Kenneth A. Voss, Joyce R. Maddox, and Janee B. Gelineau-van Waes. “Evidence for fumonisin inhibition of ceramide synthase in humans consuming maize-based foods and living in high exposure communities in Guatemala.” Mol Nutr Food Res 59, no. 11 (November 2015): 2209–24. https://doi.org/10.1002/mnfr.201500499.
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  - Shah, Asad A., Simon G. Gregory, Deidre Krupp, Sheng Feng, Allison Dorogi, Carol Haynes, Elizabeth Grass, et al. “Epigenetic profiling identifies novel genes for ascending aortic aneurysm formation with bicuspid aortic valves.” Heart Surg Forum 18, no. 4 (August 30, 2015): E134–39. https://doi.org/10.1532/hsf.1247.
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  - Cope, Heidi, Melanie E. Garrett, Simon Gregory, and Allison Ashley-Koch. “Pregnancy continuation and organizational religious activity following prenatal diagnosis of a lethal fetal defect are associated with improved psychological outcome.” Prenat Diagn 35, no. 8 (August 2015): 761–68. https://doi.org/10.1002/pd.4603.
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  - Roberson, Elle C., William E. Dowdle, Aysegul Ozanturk, Francesc R. Garcia-Gonzalo, Chunmei Li, Jan Halbritter, Nadia Elkhartoufi, et al. “TMEM231, mutated in orofaciodigital and Meckel syndromes, organizes the ciliary transition zone.” J Cell Biol 209, no. 1 (April 13, 2015): 129–42. https://doi.org/10.1083/jcb.201411087.
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  - Winnike, Jason H., Xiaoli Wei, Kevin J. Knagge, Steven D. Colman, Simon G. Gregory, and Xiang Zhang. “Comparison of GC-MS and GC×GC-MS in the analysis of human serum samples for biomarker discovery.” J Proteome Res 14, no. 4 (April 3, 2015): 1810–17. https://doi.org/10.1021/pr5011923.
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  - Shah, Asad A., Carol Haynes, Damian M. Craig, Jacqueline Sebek, Elizabeth Grass, Karen Abramson, Elizabeth Hauser, et al. “Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.” Heart Surg Forum 18, no. 1 (February 27, 2015): E1–5. https://doi.org/10.1532/hsf.1214.
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  - Lock, Eric F., Karen L. Soldano, Melanie E. Garrett, Heidi Cope, Christina A. Markunas, Herbert Fuchs, Gerald Grant, David B. Dunson, Simon G. Gregory, and Allison E. Ashley-Koch. “Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation.” Bmc Genomics 16, no. 1 (January 22, 2015): 11. https://doi.org/10.1186/s12864-014-1211-8.
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  - Li, Jing, Simon G. Gregory, Mariano A. Garcia-Blanco, and Andrew J. Armstrong. “Using circulating tumor cells to inform on prostate cancer biology and clinical utility.” Crit Rev Clin Lab Sci 52, no. 4 (2015): 191–210. https://doi.org/10.3109/10408363.2015.1023430.
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  - Riley, Ronald T., Jency L. Showker, Christine M. Lee, Cody E. Zipperer, Trevor R. Mitchell, Kenneth A. Voss, Nicholas C. Zitomer, et al. “A blood spot method for detecting fumonisin-induced changes in putative sphingolipid biomarkers in LM/Bc mice and humans.” Food Addit Contam Part a Chem Anal Control Expo Risk Assess 32, no. 6 (2015): 934–49. https://doi.org/10.1080/19440049.2015.1027746.
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  - Torres, O., J. Matute, J. Gelineau-Van Waes, J. R. Maddox, S. G. Gregory, A. E. Ashley-Koch, J. L. Showker, K. A. Voss, and R. T. Riley. “Human health implications from co-exposure to aflatoxins and fumonisins in maize-based foods in Latin America: Guatemala as a case study.” World Mycotoxin Journal 8, no. 2 (January 1, 2015): 143–59. https://doi.org/10.3920/WMJ2014.1736.
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  - Krupp, Deidre R., Karen L. Soldano, Melanie E. Garrett, Heidi Cope, Allison E. Ashley-Koch, and Simon G. Gregory. “Missing genetic risk in neural tube defects: can exome sequencing yield an insight?” Birth Defects Res a Clin Mol Teratol 100, no. 8 (August 2014): 642–46. https://doi.org/10.1002/bdra.23276.
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  - Markunas, Christina A., Eric Lock, Karen Soldano, Heidi Cope, Chien-Kuang C. Ding, David S. Enterline, Gerald Grant, Herbert Fuchs, Allison E. Ashley-Koch, and Simon G. Gregory. “Identification of Chiari Type I Malformation subtypes using whole genome expression profiles and cranial base morphometrics.” Bmc Med Genomics 7 (June 25, 2014): 39. https://doi.org/10.1186/1755-8794-7-39.
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  - Li, Yi-Ju, Mollie A. Minear, Xuejun Qin, Jacqueline Rimmler, Michael A. Hauser, R Rand Allingham, Robert P. Igo, et al. “Mitochondrial polymorphism A10398G and Haplogroup I are associated with Fuchs' endothelial corneal dystrophy.” Invest Ophthalmol Vis Sci 55, no. 7 (June 10, 2014): 4577–84. https://doi.org/10.1167/iovs.13-13517.
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  - Miranda, Marie Lynn, Rebecca Anthopolos, and Simon G. Gregory. “Association of autism with induced or augmented childbirth.” Am J Obstet Gynecol 210, no. 5 (May 2014): 492–93. https://doi.org/10.1016/j.ajog.2013.12.038.
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  - Torres, Olga, Jorge Matute, Janee Gelineau-van Waes, Joyce R. Maddox, Simon G. Gregory, Allison E. Ashley-Koch, Jency L. Showker, Nicholas C. Zitomer, Kenneth A. Voss, and Ronald T. Riley. “Urinary fumonisin B1 and estimated fumonisin intake in women from high- and low-exposure communities in Guatemala.” Mol Nutr Food Res 58, no. 5 (May 2014): 973–83. https://doi.org/10.1002/mnfr.201300481.
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  - McGarrah, Robert, Damian M. Craig, Carol Haynes, Elizabeth Hauser, Christopher B. Newgard, Simon G. Gregory, William Kraus, and Svati Shah. “OMICS PROFILING HIGHLIGHTS ENDOPLASMIC RETICULUM-ASSOCIATED DEGRADATION AND UBIQUITIN PROTEASOME PATHWAYS IN INSULIN RESISTANCE AND GLYCEMIC CONTROL.” Journal of the American College of Cardiology 63, no. 12 (April 2014): A1600–A1600. https://doi.org/10.1016/s0735-1097(14)61603-x.
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  - Miranda, Marie Lynn, Rebecca Anthopolos, and Simon G. Gregory. “Induction or augmentation of labor and autism--reply.” Jama Pediatr 168, no. 2 (February 2014): 191–92. https://doi.org/10.1001/jamapediatrics.2013.4792.
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  - Gregory, Simon G., Rebecca Anthopolos, Claire E. Osgood, Chad A. Grotegut, and Marie Lynn Miranda. “Association of Autism With Induced or Augmented Childbirth in North Carolina Birth Record (1990–1998) and Education Research (1997–2007) Databases.” Obstetrical &Amp; Gynecological Survey 69, no. 1 (January 2014): 7–9. https://doi.org/10.1097/01.ogx.0000442814.50107.fa.
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  - Connelly, Jessica J., Olga A. Cherepanova, Jennifer F. Doss, Themistoclis Karaoli, Travis S. Lillard, Christina A. Markunas, Sarah Nelson, et al. “Epigenetic regulation of COL15A1 in smooth muscle cell replicative aging and atherosclerosis.” Hum Mol Genet 22, no. 25 (December 20, 2013): 5107–20. https://doi.org/10.1093/hmg/ddt365.
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  - Ward-Caviness, Cavin, Carol Haynes, Colette Blach, Elaine Dowdy, Simon G. Gregory, Svati H. Shah, Benjamin D. Horne, William E. Kraus, and Elizabeth R. Hauser. “Gene-smoking interactions in multiple Rho-GTPase pathway genes in an early-onset coronary artery disease cohort.” Hum Genet 132, no. 12 (December 2013): 1371–82. https://doi.org/10.1007/s00439-013-1339-7.
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  - Gregory, Simon G., Rebecca Anthopolos, Claire E. Osgood, Chad A. Grotegut, and Marie Lynn Miranda. “Association of autism with induced or augmented childbirth in North Carolina Birth Record (1990-1998) and Education Research (1997-2007) databases.” Jama Pediatr 167, no. 10 (October 2013): 959–66. https://doi.org/10.1001/jamapediatrics.2013.2904.
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  - Soldano, Karen L., Melanie E. Garrett, Heidi L. Cope, J Michael Rusnak, Nathen J. Ellis, Kaitlyn L. Dunlap, Marcy C. Speer, Simon G. Gregory, and Allison E. Ashley-Koch. “Genetic association analyses of nitric oxide synthase genes and neural tube defects vary by phenotype.” Birth Defects Res B Dev Reprod Toxicol 98, no. 5 (October 2013): 365–73. https://doi.org/10.1002/bdrb.21079.
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  - Cope, Heidi, Kelly McMahon, Elizabeth Heise, Sonja Eubanks, Melanie Garrett, Simon Gregory, and Allison Ashley-Koch. “Outcome and life satisfaction of adults with myelomeningocele.” Disabil Health J 6, no. 3 (July 2013): 236–43. https://doi.org/10.1016/j.dhjo.2012.12.003.
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  - Evsyukova, Irina, Shelton S. Bradrick, Simon G. Gregory, and Mariano A. Garcia-Blanco. “Cleavage and polyadenylation specificity factor 1 (CPSF1) regulates alternative splicing of interleukin 7 receptor (IL7R) exon 6.” Rna 19, no. 1 (January 2013): 103–15. https://doi.org/10.1261/rna.035410.112.
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  - Minear, Mollie A., Yi-Ju Li, Jacqueline Rimmler, Elmer Balajonda, Shera Watson, R Rand Allingham, Michael A. Hauser, Gordon K. Klintworth, Natalie A. Afshari, and Simon G. Gregory. “Genetic screen of African Americans with Fuchs endothelial corneal dystrophy.” Mol Vis 19 (2013): 2508–16.
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  - Nolan, Daniel, William E. Kraus, Elizabeth Hauser, Yi-Ju Li, Dana K. Thompson, Jessica Johnson, Hsiang-Cheng Chen, et al. “Genome-wide linkage analysis of cardiovascular disease biomarkers in a large, multigenerational family.” Plos One 8, no. 8 (2013): e71779. https://doi.org/10.1371/journal.pone.0071779.
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  - Shah, Svati H., Sheng Feng, Elizabeth Grass, Carol Haynes, Megan Chryst-Ladd, Damian Craig, Elizabeth R. Hauser, Christopher B. Newgard, William E. Kraus, and Simon G. Gregory. “Integration of Whole Genome Methylation with Metabolomics Identifies Novel Cardiovascular Disease Genes.” Circulation 126, no. 21 (November 20, 2012).
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  - Kresse, Stine H., Jeanne-Marie Berner, Leonardo A. Meza-Zepeda, Simon G. Gregory, Wen-Lin Kuo, Joe W. Gray, Anne Forus, and Ola Myklebost. “Mapping and characterization of the amplicon near APOA2 in 1q23 in human sarcomas by FISH and array CGH.” Mol Cancer 4 (November 7, 2005): 39. https://doi.org/10.1186/1476-4598-4-39.
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  - Hoffman, Hal M., Simon G. Gregory, James L. Mueller, Mark Tresierras, David H. Broide, Alan A. Wanderer, and Richard D. Kolodner. “Fine structure mapping of CIAS1: identification of an ancestral haplotype and a common FCAS mutation, L353P.” Hum Genet 112, no. 2 (February 2003): 209–16. https://doi.org/10.1007/s00439-002-0860-x.
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  - Ewens, Kathryn G., Lindsey N. Johnson, Beth Wapelhorst, Kristin O’Brien, Sarah Gutin, V Anne Morrison, Craig Street, Simon G. Gregory, Richard S. Spielman, and Patrick Concannon. “Linkage and association with type 1 diabetes on chromosome 1q42.” Diabetes 51, no. 11 (November 2002): 3318–25. https://doi.org/10.2337/diabetes.51.11.3318.
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  - Parvari, Ruti, Eli Hershkovitz, Nili Grossman, Rafael Gorodischer, Bart Loeys, Alexandra Zecic, Geert Mortier, et al. “Mutation of TBCE causes hypoparathyroidism-retardation-dysmorphism and autosomal recessive Kenny-Caffey syndrome.” Nat Genet 32, no. 3 (November 2002): 448–52. https://doi.org/10.1038/ng1012.
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  - McMullan, Tristan W., John A. Crolla, Simon G. Gregory, Nigel P. Carter, Rachel A. Cooper, Gareth R. Howell, and David O. Robinson. “A candidate gene for congenital bilateral isolated ptosis identified by molecular analysis of a de novo balanced translocation.” Hum Genet 110, no. 3 (March 2002): 244–50. https://doi.org/10.1007/s00439-002-0679-5.
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  - Watanabe, Y., J. C. Murray, B. C. Bjork, C. P. Bird, P. W. Chiang, S. G. Gregory, D. M. Kurnit, and B. C. Schutte. “Matroshka and ectopic polymorphisms: Two new classes of DNA sequence variation identified at the Van der Woude syndrome locus on 1q32-q41.” Hum Mutat 18, no. 5 (November 2001): 422–34. https://doi.org/10.1002/humu.1213.
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  - Cai, W. W., C. W. Chow, S. Damani, S. G. Gregory, M. Marra, and A. Bradley. “An SSLP marker-anchored BAC framework map of the mouse genome.” Nat Genet 29, no. 2 (October 2001): 133–34. https://doi.org/10.1038/ng1001-133.
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  - Stover, C., Y. Endo, M. Takahashi, N. J. Lynch, C. Constantinescu, T. Vorup-Jensen, S. Thiel, et al. “The human gene for mannan-binding lectin-associated serine protease-2 (MASP-2), the effector component of the lectin route of complement activation, is part of a tightly linked gene cluster on chromosome 1p36.2-3.” Genes Immun 2, no. 3 (May 2001): 119–27. https://doi.org/10.1038/sj.gene.6363745.
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  - Doudney, K., J. N. Murdoch, C. Paternotte, L. Bentley, S. Gregory, A. J. Copp, and P. Stanier. “Comparative physical and transcript maps of approximately 1 Mb around loop-tail, a gene for severe neural tube defects on distal mouse chromosome 1 and human chromosome 1q22-q23.” Genomics 72, no. 2 (March 1, 2001): 180–92. https://doi.org/10.1006/geno.2000.6463.
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  - Bentley, D. R., P. Deloukas, A. Dunham, L. French, S. G. Gregory, S. J. Humphray, A. J. Mungall, et al. “The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X.” Nature 409, no. 6822 (February 15, 2001): 942–43. https://doi.org/10.1038/35057165.
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  - Schutte, B. C., J. D. Carpten, A. Forus, S. G. Gregory, A. Horii, and P. S. White. “Report of the sixth international workshop on human chromosome 1 mapping 2000.” Cytogenetics and Cell Genetics 92, no. 1–2 (2001): 24–40.
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  - White, P. S., P. M. Thompson, B. A. Seifried, E. P. Sulman, S. J. Jensen, C. Guo, J. M. Maris, et al. “Detailed molecular analysis of 1p36 in neuroblastoma.” Med Pediatr Oncol 36, no. 1 (January 2001): 37–41. https://doi.org/10.1002/1096-911X(20010101)36:1<37::AID-MPO1010>3.0.CO;2-L.
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  - Carpten, J. D., I. Makalowska, C. M. Robbins, N. Scott, R. Sood, T. D. Connors, T. I. Bonner, et al. “A 6-Mb high-resolution physical and transcription map encompassing the hereditary prostate cancer 1 (HPC1) region.” Genomics 64, no. 1 (February 15, 2000): 1–14. https://doi.org/10.1006/geno.1999.6051.
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  - Shackleton, S., D. J. Lloyd, S. N. Jackson, R. Evans, M. F. Niermeijer, B. M. Singh, H. Schmidt, et al. “LMNA, encoding lamin A/C, is mutated in partial lipodystrophy.” Nat Genet 24, no. 2 (February 2000): 153–56. https://doi.org/10.1038/72807.
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  - Schutte, B. C., B. C. Bjork, K. B. Coppage, M. I. Malik, S. G. Gregory, D. J. Scott, L. M. Brentzell, Y. Watanabe, M. J. Dixon, and J. C. Murray. “A preliminary gene map for the Van der Woude syndrome critical region derived from 900 kb of genomic sequence at 1q32-q41.” Genome Res 10, no. 1 (January 2000): 81–94.
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  - White, P. S., A. Forus, T. C. Matise, B. C. Schutte, N. Spieker, P. Stanier, J. M. Vance, and S. G. Gregory. “Fifth International Workshop on Human Chromosome 1 Mapping 1999, the Sanger Centre, Cambridge, UK, August 5-7 1999: Report.” Cytogenetics and Cell Genetics 87, no. 3–4 (December 1, 1999): 143–63.
  - Labay, V., T. Raz, D. Baron, H. Mandel, H. Williams, T. Barrett, R. Szargel, et al. “Mutations in SLC19A2 cause thiamine-responsive megaloblastic anaemia associated with diabetes mellitus and deafness.” Nat Genet 22, no. 3 (July 1999): 300–304. https://doi.org/10.1038/10372.
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  - Gregory, S. G., M. Vaudin, R. Wooster, M. Coleman, D. Mischke, C. Porter, B. C. Schutte, P. White, and J. M. Vance. “Fourth International Workshop on Human Chromosome 1 Mapping 1998, Sanger Centre, Cambridge, United Kingdom, June 25-27 1998: Report.” Cytogenetics and Cell Genetics 83, no. 3–4 (December 1, 1998): 147–67.
  - Gregory, S. G., M. Vaudin, R. Wooster, M. Coleman, D. Mischke, C. Porter, B. C. Schutte, P. White, and J. M. Vance. “Report of the fourth international workshop on human chromosome 1 mapping 1998.” Cytogenetics and Cell Genetics 83, no. 3–4 (January 1, 1998): 148–67.
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  - Gregory, S. G., G. R. Howell, and D. R. Bentley. “Genome mapping by fluorescent fingerprinting.” Genome Res 7, no. 12 (December 1997): 1162–68. https://doi.org/10.1101/gr.7.12.1162.
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  - Roest Crollius, H., M. T. Ross, A. Grigoriev, C. J. Knights, E. Holloway, J. Misfud, K. Li, et al. “An integrated YAC map of the human X chromosome.” Genome Res 6, no. 10 (October 1996): 943–55. https://doi.org/10.1101/gr.6.10.943.
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  - Forbes, S. A., L. Brennan, M. Richardson, A. Coffey, C. G. Cole, S. G. Gregory, D. R. Bentley, S. Mumm, G. E. Moore, and P. Stanier. “Refined mapping and YAC contig construction of the X-linked cleft palate and ankyloglossia locus (CPX) including the proximal X-Y homology breakpoint within Xq21.3.” Genomics 31, no. 1 (January 1, 1996): 36–43. https://doi.org/10.1006/geno.1996.0006.
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  - Van de Vosse, E., A. A. Bergen, E. J. Meershoek, J. C. Oosterwijk, S. Gregory, B. Bakker, J. Weissenbach, A. J. Coffey, G. J. van Ommen, and J. T. Den Dunnen. “An Xp22.1-p22.2 YAC contig encompassing the disease loci for RS, KFSD, CLS, HYP and RP15: refined localization of RS.” Eur J Hum Genet 4, no. 2 (1996): 101–4. https://doi.org/10.1159/000472177.
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  - Wooster, R., G. Bignell, J. Lancaster, S. Swift, S. Seal, J. Mangion, N. Collins, S. Gregory, C. Gumbs, and G. Micklem. “Identification of the breast cancer susceptibility gene BRCA2.” Nature 378, no. 6559 (December 21, 1995): 789–92. https://doi.org/10.1038/378789a0.
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  - Fantes, J. A., K. Oghene, S. Boyle, S. Danes, J. M. Fletcher, E. A. Bruford, K. Williamson, A. Seawright, A. Schedl, and I. Hanson. “A high-resolution integrated physical, cytogenetic, and genetic map of human chromosome 11: distal p13 to proximal p15.1.” Genomics 25, no. 2 (January 20, 1995): 447–61. https://doi.org/10.1016/0888-7543(95)80045-n.
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  - Redeker, E., J. M. Hoovers, M. Alders, C. J. van Moorsel, A. C. Ivens, S. Gregory, L. Kalikin, J. Bliek, L. de Galan, and R. van den Bogaard. “An integrated physical map of 210 markers assigned to the short arm of human chromosome 11.” Genomics 21, no. 3 (June 1994): 538–50. https://doi.org/10.1006/geno.1994.1312.
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  - Heding, I. J., A. C. Ivens, J. Wilson, M. Strivens, S. Gregory, J. M. Hoovers, M. Mannens, B. Redeker, D. Porteous, and V. van Heyningen. “The generation of ordered sets of cosmid DNA clones from human chromosome region 11p.” Genomics 13, no. 1 (May 1992): 89–94. https://doi.org/10.1016/0888-7543(92)90206-8.
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- Book Sections
  - Markunas, C. A., A. E. Ashley-Koch, and S. G. Gregory. “Genetics of the chiari I and II malformations.” In The Chiari Malformations, 289–97, 2020. https://doi.org/10.1007/978-3-030-44862-2_23.
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  - Gregory, S. G. “The epigenetics of Autism-Running beyond the bases.” In Frontiers in Autism Research: New Horizons for Diagnosis and Treatment, 303–33, 2014. https://doi.org/10.1142/9789814602167_0013.
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  - Markunas, C. A., A. E. Ashley-Koch, and S. G. Gregory. “Genetics of the Chiari i and II malformations.” In The Chiari Malformations, 9781461463696:93–101, 2013. https://doi.org/10.1007/978-1-4614-6369-6_7.
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  - Gregory, S. G. “Genomic Rearrangements in Autism: The Contribution of Copy Number Loss and Gain to the Etiology of Autism Spectrum Disorders.,” 52:S17–S17. WILEY-BLACKWELL, 2011.
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  - Gregory, Simon, and John Gilbert. “Strategies for genotype generation.,” Chapter 1:Unit-1.3, 2005. https://doi.org/10.1002/0471142905.hg0103s47.
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  - Stenger, J. E., and S. G. Gregory. “Genomics and Bioinformatics.” In Genetic Analysis of Complex Diseases: Second Edition, 423–54, 2005. https://doi.org/10.1002/9780471781141.ch15.
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  - Coffey, A., S. Gregory, and C. G. Cole. “Alu-PCR fingerprinting of YACs.,” 54:97–114, 1996. https://doi.org/10.1385/0-89603-313-9:97.
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- Reports
  - Schutte, B. C., J. D. Carpten, A. Forus, S. G. Gregory, A. Horii, and P. S. White. “Report and abstracts of the sixth international workshop on human chromosome 1 mapping 2000. Iowa City, Iowa, USA. 30 September-3 October 2000.,” 2001. https://doi.org/10.1159/000056867.
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  - White, P. S., A. Forus, T. C. Matise, B. C. Schutte, N. Spieker, P. Stanier, J. M. Vance, and S. G. Gregory. “Report of the fifth international workshop on human chromosome 1 mapping 1999.,” 1999. https://doi.org/10.1159/000015458.
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  - Gregory, S. G., M. Vaudin, R. Wooster, M. Coleman, D. Mischke, C. Porter, B. C. Schutte, P. White, and J. M. Vance. “Report of the fourth international workshop on human chromosome 1 mapping 1998.,” 1998. https://doi.org/10.1159/000015174.
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  - Vance, J. M., T. C. Matise, R. Wooster, B. C. Schutte, G. A. P. Bruns, N. Van Roy, G. M. Brodeur, et al. “Third International Chromosome 1 Maping Workshop, Duke University, Durham, NC, USA, 25-27 April 1997: Report of the third international workshop on human chromosome 1 mapping 1997,” December 1, 1997.
  - Vance, J. M., T. C. Matise, R. Wooster, B. C. Schutte, G. A. Bruns, N. van Roy, G. M. Brodeur, et al. “Report and abstracts of the third international workshop on human chromosome 1 mapping 1997.,” 1997.
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- Conference Papers
  - Chen, Tianyi, George Dalton, Seh-Hoon Oh, Raquel Maeso-Diaz, Kuo Du, Rachel A. Meyers, Cynthia Guy, et al. “Hepatocyte Smoothened Activity Controls Susceptibility to Insulin Resistance and Nonalcoholic Fatty Liver Disease.” In Cellular and Molecular Gastroenterology and Hepatology, S2352-345X(22)00256-9, 2022. https://doi.org/10.1016/j.jcmgh.2022.12.008.
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  - Patierno, Brendon M., Wen-Chi Foo, Tyler Allen, Jason A. Somarelli, Kathryn E. Ware, Santosh Gupta, Sandra Wise, et al. “Characterization of a castrate-resistant prostate cancer xenograft derived from a patient of West African ancestry.” In Prostate Cancer Prostatic Dis, 25:513–23, 2022. https://doi.org/10.1038/s41391-021-00460-y.
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  - Gregory, S. G., S. Arvai, G. D. Dalton, K. Pegram, M. Kanayama, A. S. Chao, G. K. Matsushima, M. L. Shinohara, and E. J. Benner. “Characterizing the immunomodulation and remyelination efficacy of 20-aHydroxycholesterol in pre-clinical models of multiple sclerosis.” In Multiple Sclerosis Journal, 28:247–247, 2022.
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  - Gupta, Santosh, Susan Halabi, Gabor Kemeny, Monika Anand, Paraskevi Giannakakou, David M. Nanus, Daniel J. George, Simon G. Gregory, and Andrew J. Armstrong. “Circulating Tumor Cell Genomic Evolution and Hormone Therapy Outcomes in Men with Metastatic Castration-Resistant Prostate Cancer.” In Mol Cancer Res, 19:1040–50, 2021. https://doi.org/10.1158/1541-7786.MCR-20-0975.
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  - Chen, Tianyi, George D. Dalton, Seh-Hoon Oh, Raquel Maeso Diaz, Kuo Du, Rachel A. Myers, Simon G. Gregory, et al. “SINGLE CELL RNA SEQUENCING DATA FROM MICE IDENTIFIES INHIBITED HEDGEHOG SIGNALING IN HEPATOCYTES AS A CRITICAL EARLY EVENT IN HUMAN NAFLD.” In Hepatology, 74:142A-142A, 2021.
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  - Chen, Tianyi, Seh-Hoon Oh, Simon G. Gregory, Xiling Shen, and Anna Mae Diehl. “DYNAMIC EPIGENETIC REPROGRAMMING ENABLES FUNCTIONAL DIVERSIFICATION OF HEPATOCYTES DURING LIVER REGENERATION.” In Hepatology, 72:119A-120A, 2020.
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  - Lee, M., J. Shannon, V. Jain, S. Joost, M. Kasper, D. L. Corcoran, S. G. Gregory, and A. S. MacLeod. “Skin epidermal keratinocyte differentiation-associated processes regulate homeostatic antiviral protein expression.” In Journal of Investigative Dermatology, 140:S29–S29, 2020.
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  - Oh, Seh-Hoon, Mark Jewell, Richard T. Premont, Jason Gibson, Wayne Glover, Simon G. Gregory, David Hsu, Cynthia D. Guy, and Anna Mae Diehl. “Yap1 AS A THERAPEUTIC TARGET IN FIBROLAMELLAR CARCINOMA.” In Hepatology, 70:888A-889A. WILEY, 2019.
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  - Jewell, Mark, Richard T. Premont, Jason Gibson, Wayne Glover, Timothy A. Dinh, Eliane L. Wauthier, Lola M. Reid, et al. “Yap1 As a Therapeutic Target in Fibrolamellar Carcinoma.” In Hepatology, 68:1243A-1243A. WILEY, 2018.
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  - Kanayama, Masashi, Shengjie Xu, Keiko Danzaki, Jason R. Gibson, Makoto Inoue, Simon G. Gregory, and Mari L. Shinohara. “Skewing the population balance between lymphoid and myeloid cells by osteopontin isoforms.” In Cytokine, 100:161–161. ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2017.
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  - Cote, Sabrina A., Simon G. Gregory, Jason Winnike, Kevin Knagge, Olga Ilkayeva, Thomas O’Connell, James Bain, et al. “Integrated metabolomic and transcriptomic profiles of males with multiple sclerosis.” In Multiple Sclerosis Journal, 22:9–10. SAGE PUBLICATIONS LTD, 2016.
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  - Shah, Svati H., Lydia Kwee, Nathan Stitziel, Elizabeth R. Hauser, Carol Haynes, Sekar Kathiresan, Simon G. Gregory, and William E. Kraus. “Rare Variants Identified With Whole Exome Chip Genotyping Are Associated With Insulin Resistance and Glycemic Control.” In Circulation, Vol. 128. LIPPINCOTT WILLIAMS & WILKINS, 2013.
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  - Kraus, William E., Sheng Feng, Elizabeth R. Hauser, Simon G. Gregory, Carol Haynes, Z. E. Dowdy, Damian M. Craig, and Svati H. Shah. “Association of Gene Expression Signatures with Small Molecule Metabolic Intermediates that Predict Cardiovascular Mortality in CATHGEN.” In Circulation, Vol. 127. LIPPINCOTT WILLIAMS & WILKINS, 2013.
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  - Shah, Asad A., Damian M. Craig, Carol Haynes, Jacqueline K. Sebek, Elizabeth Grass, Karen Abramson, Peter K. Smith, et al. “Genome-Wide Association Identifies Genetic Variants Associated With Vein Graft Stenosis After Coronary Artery Bypass Grafting.” In Circulation, Vol. 124. LIPPINCOTT WILLIAMS & WILKINS, 2011.
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  - Minear, M. A., N. A. Afshari, E. Balajonda, B. Zhao, J. Rimmler, Y. -. J. Li, G. K. Klintworth, and S. G. Gregory. “Analysis of SLC4A11 and COL8A2 Mutations in Fuchs Endothelial Corneal Dystrophy (FECD).” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.
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  - Wang, Liyong, Elizabeth R. Hauser, David Crosslin, Sarah Nelson, A. B. Hale, Simon G. Gregory, Svati H. Shah, William E. Kraus, Pascal J. Goldschmidt-Clermont, and Jeffery M. Vance. “Genomic convergence identified CAPG and VAMP8 as candidate genes for CAD.” In Circulation, 116:807–807. LIPPINCOTT WILLIAMS & WILKINS, 2007.
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  - Wang, Liyong, Elizabeth R. Hauser, Svati H. Shah, Carol Haynes, Jason M. Rose, Marco Harris, Julie Rombaut, et al. “Identification of kalirin gene as a novel coronary artery disease gene through peak-wide association mapping on chromosome 3q13-21.” In Circulation, 114:887–887. LIPPINCOTT WILLIAMS & WILKINS, 2006.
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  - Gregory, S. G., N. V. Johnson, J. J. Connelly, J. Virgadamo, R. E. McLendon, J. M. Vance, and D. D. Bigner. “Characterizing genomic rearrangements in oligodendroglioma using whole genome tilepath hrCGH arrays.” In Neuro Oncology, 8:421–421. DUKE UNIV PRESS, 2006.
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  - Johnson, Nicole V., Jessica J. Connelly, Josh Virigadamo, Roger E. McLendon, Jeffrey M. Vance, Darell D. Bigner, and Simon G. Gregory. “Characterizing oligodendroglioma rearrangements using whole genome hrCGH arrays.” In Cancer Research, Vol. 66. AMER ASSOC CANCER RESEARCH, 2006.
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  - Meza-Zepeda, Leonardo A., Stine H. Kresse, Ana H. Barragan-Polania, Junbai Wang, Bjorn E. Kristiansen, Wen-Lin Kuo, Simon G. Gregory, Joe W. Gray, and Ola Myklebost. “Profiling of DNA copy number changes in sarcomas by array comparative genomic hybridization.” In Cancer Research, Vol. 66. AMER ASSOC CANCER RESEARCH, 2006.
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  - Wang, L. Y., E. R. Hauser, S. H. Shah, W. E. Kraus, D. Seo, L. L. Huang, J. M. Rose, et al. “Identification of a novel locus for left main coronary artery disease.” In Circulation, 112:U413–U413. LIPPINCOTT WILLIAMS & WILKINS, 2005.
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  - Haines, J. L., S. Schmidt, S. Sawcer, L. F. Barcellos, S. G. Gregory, J. Sims, M. Booze, et al. “Comprehensive analysis of candidate modifier genes for multiple sclerosis (MS) on chromosome 19q13.” In American Journal of Human Genetics, 73:368–368. UNIV CHICAGO PRESS, 2003.
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  - Maris, J. M., C. Guo, D. Blake, P. S. White, M. D. Hogarty, P. M. Thompson, V. Rajalingam, et al. “Comprehensive analysis of chromosome 1p deletions in neuroblastoma.” In Med Pediatr Oncol, 36:32–36, 2001. https://doi.org/10.1002/1096-911X(20010101)36:1<32::AID-MPO1009>3.0.CO;2-0.
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  - Little, D., C. L. Wu, R. D’Amico, D. Corcoran, S. Gregory, and F. Guilak. “Epigenetic Analysis of Adipose Stem Cells in Obesity Identifies Dysregulation of Critical Pathways in Musculoskeletal Regeneration and Disease.,” n.d.
Teaching & Mentoring
Recent Courses
Advising & Mentoring
- Dr. Gregory is/has mentored high school (12), undergraduate (14), graduate candidate rotation (9), graduate candidate thesis committee (14), graduate candidate primary mentor (6), Masters candidate (1), Post-doctoral fellow (4) and junior faculty (5) trainees.
Scholarly, Clinical, & Service Activities
Presentations & Appearances
Outreach & Engaged Scholarship
- Faculty Mentor. Durham School of the Arts Independent Study Partnership with DMPI. 2014 - 2022 2014 - 2022
Service to the Profession
Service to Duke

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Education, Training, & Certifications

Previous Appointments & Affiliations

Academic Positions Outside Duke

In the News

Awards & Honors

Selected Grants

External Relationships

Selected Publications

Academic Articles

Book Sections

Reports

Conference Papers

Recent Courses

Advising & Mentoring

Presentations & Appearances

Outreach & Engaged Scholarship

Service to the Profession

Service to Duke