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Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans.

Publication ,  Journal Article
Hsu, Y-H; Liu, Y; Hannan, MT; Maixner, W; Smith, SB; Diatchenko, L; Golightly, YM; Menz, HB; Kraus, VB; Doherty, M; Wilson, AG; Jordan, JM
Published in: J Med Genet
November 2015

OBJECTIVE: Hallux valgus (HV) affects ∼36% of Caucasian adults. Although considered highly heritable, the underlying genetic determinants are unclear. We conducted the first genome-wide association study (GWAS) aimed to identify genetic variants associated with HV. METHODS: HV was assessed in three Caucasian cohorts (n=2263, n=915 and n=1231 participants, respectively). In each cohort, a GWAS was conducted using 2.5 M imputed SNPs. Mixed-effect regression with the additive genetic model adjusted for age, sex, weight and within-family correlations was used for both sex-specific and combined analyses. To combine GWAS results across cohorts, fixed-effect inverse-variance meta-analyses were used. Following meta-analyses, top-associated findings were also examined in an African American cohort (n=327). RESULTS: The proportion of HV variance explained by genome-wide genotyped SNPs was 50% in men and 48% in women. A higher proportion of genetic determinants of HV were sex specific. The most significantly associated SNP in men was rs9675316 located on chr17q23-a24 near the AXIN2 gene (p=0.000000546×10(-7)); the most significantly associated SNP in women was rs7996797 located on chr13q14.1-q14.2 near the ESD gene (p=0.000000721×10(-7)). Genome-wide significant SNP-by-sex interaction was found for SNP rs1563374 located on chr11p15.1 near the MRGPRX3 gene (interaction p value =0.0000000041×10(-9)). The association signals diminished when combining men and women. CONCLUSIONS: The findings suggest that the potential pathophysiological mechanisms of HV are complex and strongly underlined by sex-specific interactions. The identified genetic variants imply contribution of biological pathways observed in osteoarthritis as well as new pathways, influencing skeletal development and inflammation.

Duke Scholars

Published In

J Med Genet

DOI

EISSN

1468-6244

Publication Date

November 2015

Volume

52

Issue

11

Start / End Page

762 / 769

Location

England

Related Subject Headings

  • White People
  • Sex Factors
  • Receptors, G-Protein-Coupled
  • Polymorphism, Single Nucleotide
  • Middle Aged
  • Male
  • Humans
  • Hallux Valgus
  • Genome-Wide Association Study
  • Genetics & Heredity
 

Citation

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MLA
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Hsu, Y.-H., Liu, Y., Hannan, M. T., Maixner, W., Smith, S. B., Diatchenko, L., … Jordan, J. M. (2015). Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans. J Med Genet, 52(11), 762–769. https://doi.org/10.1136/jmedgenet-2015-103142
Hsu, Yi-Hsiang, Youfang Liu, Marian T. Hannan, William Maixner, Shad B. Smith, Luda Diatchenko, Yvonne M. Golightly, et al. “Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans.J Med Genet 52, no. 11 (November 2015): 762–69. https://doi.org/10.1136/jmedgenet-2015-103142.
Hsu Y-H, Liu Y, Hannan MT, Maixner W, Smith SB, Diatchenko L, et al. Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans. J Med Genet. 2015 Nov;52(11):762–9.
Hsu, Yi-Hsiang, et al. “Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans.J Med Genet, vol. 52, no. 11, Nov. 2015, pp. 762–69. Pubmed, doi:10.1136/jmedgenet-2015-103142.
Hsu Y-H, Liu Y, Hannan MT, Maixner W, Smith SB, Diatchenko L, Golightly YM, Menz HB, Kraus VB, Doherty M, Wilson AG, Jordan JM. Genome-wide association meta-analyses to identify common genetic variants associated with hallux valgus in Caucasian and African Americans. J Med Genet. 2015 Nov;52(11):762–769.

Published In

J Med Genet

DOI

EISSN

1468-6244

Publication Date

November 2015

Volume

52

Issue

11

Start / End Page

762 / 769

Location

England

Related Subject Headings

  • White People
  • Sex Factors
  • Receptors, G-Protein-Coupled
  • Polymorphism, Single Nucleotide
  • Middle Aged
  • Male
  • Humans
  • Hallux Valgus
  • Genome-Wide Association Study
  • Genetics & Heredity