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Integrative Multi-omics Analysis of the Human Skeletal Muscle Response to Endurance or Resistance Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC).

Publication ,  Journal Article
Keshishian, H; Many, GM; Smith, G; Clark, NM; Iyer, G; Hart, P; Lindholm, ME; Montalvo, S; Zhang, Z; Jin, C; Sanford, JA; Carr, SA; Mani, DR ...
Published in: bioRxiv
March 6, 2026

The Molecular Transducers of Physical Activity Consortium (MoTrPAC) was established to systematically characterize the molecular basis of the health benefits of exercise. Here, we present the integrative, multi-omics response of human skeletal muscle to acute endurance (EE) and resistance (RE) exercise. Distinct temporal responses were observed, with changes in ATAC-seq, phosphoproteome, and metabolome occurring before changes in the transcriptome and proteome. These distinct temporal multi-omic dynamics were used to identify transcriptional regulatory hubs converging around MEF2A and NFIC regulation of autophagy, angiogenesis and metabolism. Further, early RE-specific phosphoproteome signatures counteracted epigenetic modifications and downregulated transcripts involved in protein turnover. Additional findings include suppression of HIPK2/3 kinase signatures linked to the acute exercise regulation of sarcomeric proteins TTN, NEB, ANKRD2 and LMOD2. Our data demonstrate distinct temporal regulation across the multi-omic landscape of human skeletal muscle, with EE and RE eliciting common and unique molecular signatures.

Duke Scholars

Published In

bioRxiv

DOI

EISSN

2692-8205

Publication Date

March 6, 2026

Location

United States
 

Citation

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Keshishian, H., Many, G. M., Smith, G., Clark, N. M., Iyer, G., Hart, P., … MoTrPAC Study Group. (2026). Integrative Multi-omics Analysis of the Human Skeletal Muscle Response to Endurance or Resistance Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC). BioRxiv. https://doi.org/10.64898/2026.03.04.705181
Keshishian, Hasmik, Gina M. Many, Gregory Smith, Natalie M. Clark, Gayatri Iyer, Patrick Hart, Malene E. Lindholm, et al. “Integrative Multi-omics Analysis of the Human Skeletal Muscle Response to Endurance or Resistance Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC).BioRxiv, March 6, 2026. https://doi.org/10.64898/2026.03.04.705181.
Keshishian H, Many GM, Smith G, Clark NM, Iyer G, Hart P, Lindholm ME, Montalvo S, Zhang Z, Jin C, Sanford JA, Carr SA, Adkins JN, Mani DR, Bodine SC, Trappe S, Houmard JA, Musi N, Huffman KM, Kraus WE, Sparks LM, Thalacker-Mercer AE, Sealfon SC, Xia AY, Katz DH, Newgard CB, Burant CF, Coen PM, Goodpaster BH, MoTrPAC Study Group. Integrative Multi-omics Analysis of the Human Skeletal Muscle Response to Endurance or Resistance Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC). bioRxiv. 2026 Mar 6;

Published In

bioRxiv

DOI

EISSN

2692-8205

Publication Date

March 6, 2026

Location

United States