Scholars@Duke
Journal cover image

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Publication ,  Journal Article
Davis, IW; Murray, LW; Richardson, JS; Richardson, DC
Published in: Nucleic Acids Res
July 1, 2004
Published version (DOI) Link to item

MolProbity is a general-purpose web service offering quality validation for three-dimensional (3D) structures of proteins, nucleic acids and complexes. It provides detailed all-atom contact analysis of any steric problems within the molecules and can calculate and display the H-bond and van der Waals contacts in the interfaces between components. An integral step in the process is the addition and full optimization of all hydrogen atoms, both polar and nonpolar. The results are reported in multiple forms: as overall numeric scores, as lists, as downloadable PDB and graphics files, and most notably as informative, manipulable 3D kinemage graphics shown on-line in the KiNG viewer. This service is available free to all users at http://kinemage.biochem.duke.edu.

Duke Scholars

Jane Shelby Richardson
Author Jane Shelby Richardson Biochemistry
David C. Richardson
Author David C. Richardson Biochemistry

Published In

Nucleic Acids Res

DOI

10.1093/nar/gkh398

EISSN

1362-4962

Publication Date

July 1, 2004

Volume

32

Issue

Web Server issue

Start / End Page

W615 / W619

Location

England

Related Subject Headings

  • User-Computer Interface
  • Software
  • Reproducibility of Results
  • Proteins
  • Protein Conformation
  • Nucleic Acids
  • Nucleic Acid Conformation
  • Molecular Structure
  • Models, Molecular
  • Macromolecular Substances
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Davis, I. W., Murray, L. W., Richardson, J. S., & Richardson, D. C. (2004). MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res, 32(Web Server issue), W615–W619. https://doi.org/10.1093/nar/gkh398
Davis, Ian W., Laura Weston Murray, Jane S. Richardson, and David C. Richardson. “MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.” Nucleic Acids Res 32, no. Web Server issue (July 1, 2004): W615–19. https://doi.org/10.1093/nar/gkh398.
Davis IW, Murray LW, Richardson JS, Richardson DC. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W615–9.
Davis, Ian W., et al. “MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.” Nucleic Acids Res, vol. 32, no. Web Server issue, July 2004, pp. W615–19. Pubmed, doi:10.1093/nar/gkh398.
Davis IW, Murray LW, Richardson JS, Richardson DC. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W615–W619.
Journal cover image

Published In

Nucleic Acids Res

DOI

10.1093/nar/gkh398

EISSN

1362-4962

Publication Date

July 1, 2004

Volume

32

Issue

Web Server issue

Start / End Page

W615 / W619

Location

England

Related Subject Headings

  • User-Computer Interface
  • Software
  • Reproducibility of Results
  • Proteins
  • Protein Conformation
  • Nucleic Acids
  • Nucleic Acid Conformation
  • Molecular Structure
  • Models, Molecular
  • Macromolecular Substances